Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0610c_(-)_704755_705912
DateFri Jul 26 01:50:17 BST 2019
Unique Job ID1811181430128922
SequenceMDDELRGLLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.867 Y:14.758 Z:12.847
Model (left) based on template c6d0tA_
Top template information
PDB header:de novo protein
Chain: A: PDB Molecule:bb1;
PDBTitle: de novo design of a fluorescence-activating beta barrel - bb1
Confidence and coverage
Confidence: 25.8% Coverage: 2%
8 residues ( 2% of your sequence) have been modelled with 25.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6d0tA_



25.8 100
PDB header:de novo protein
Chain: A: PDB Molecule:bb1;
PDBTitle: de novo design of a fluorescence-activating beta barrel - bb1
2c2e76D_



18.3 30
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
3d1ysra1



18.2 25
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:Histidine kinase
4c1iqpF_



17.3 30
PDB header:replication
Chain: F: PDB Molecule:rfcs;
PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus
5c5muuI_



16.8 67
PDB header:virus
Chain: I: PDB Molecule:major outer capsid protein;
PDBTitle: dsrna bacteriophage phi6 nucleocapsid
6d1e5qa2



15.8 26
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Homoserine dehydrogenase-like
7c2jrtA_



14.8 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5
8d2oa4a1



14.6 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:SPO1678-like
9c4lgdH_



12.7 44
PDB header:signaling protein
Chain: H: PDB Molecule:ras association domain family member 5, rassf5;
PDBTitle: structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
10c2p5dA_



12.1 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0310 protein mjecl36;
PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661
11d1jsxa_



12.1 15
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
12d2hd9a1



12.1 22
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Atu2648/PH1033-like
13d2e74d1



10.6 30
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
14c2ymyB_



10.0 50
PDB header:apoptosis
Chain: B: PDB Molecule:ras association domain-containing protein 5;
PDBTitle: structure of the murine nore1-sarah domain
15c5cwsF_



9.7 35
PDB header:protein transport
Chain: F: PDB Molecule:nucleoporin nic96;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
16c5cwsL_



9.7 35
PDB header:protein transport
Chain: L: PDB Molecule:nucleoporin nic96;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
17c2v3cC_



9.5 25
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
18d1vhib_



8.8 50
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
19c5fnoB_



8.6 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:manganese lipoxygenase;
PDBTitle: manganese lipoxygenase
20c2px0D_



8.5 26
PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
21d1iqpa2



not modelled 8.2 30
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
22d1txka2



not modelled 8.0 36
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
23c2la3A_



not modelled 8.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
24d3dhpa1



not modelled 7.8 31
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
25d1hx0a1



not modelled 7.6 38
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
26d1g94a1



not modelled 7.4 38
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
27c1sr9A_



not modelled 7.2 28
PDB header:transferase
Chain: A: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of leua from mycobacterium tuberculosis
28d1b3ta_



not modelled 7.1 50
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
29c3vdoB_



not modelled 7.0 33
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
30c1txkA_



not modelled 7.0 36
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
31c3vuoA_



not modelled 6.9 64
PDB header:toxin
Chain: A: PDB Molecule:ntnha;
PDBTitle: crystal structure of nontoxic nonhemagglutinin subcomponent (ntnha)2 from clostridium botulinum serotype d strain 4947
32c2ovcA_



not modelled 6.9 40
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily kqt member 4;
PDBTitle: crystal structure of a coiled-coil tetramerization domain from kv7.42 channels
33c2rn5B_



not modelled 6.5 57
PDB header:hormone
Chain: B: PDB Molecule:insulin;
PDBTitle: humal insulin mutant b31lys-b32arg
34c4qccA_



not modelled 6.2 21
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
35d1kzyc2



not modelled 6.2 36
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
36d1jaea1



not modelled 6.1 54
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
37c3vcmP_



not modelled 6.0 44
PDB header:hydrolase
Chain: P: PDB Molecule:prorenin;
PDBTitle: crystal structure of human prorenin
38c1hisB_



not modelled 5.9 78
PDB header:hormone
Chain: B: PDB Molecule:insulin;
PDBTitle: structure and dynamics of des-pentapeptide-insulin in2 solution: the molten-globule hypothesis.
39c5wuqD_



not modelled 5.9 14
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
40c4aupA_



not modelled 5.8 44
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase a2 group xiii;
PDBTitle: tuber borchii phospholipase a2
41c5wknD_



not modelled 5.6 86
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
42c4lgdF_



not modelled 5.3 44
PDB header:signaling protein
Chain: F: PDB Molecule:ras association domain family member 5, rassf5;
PDBTitle: structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
43c2j289_



not modelled 5.3 25
PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
44c5vbaA_



not modelled 5.3 26
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
45c5y88S_



not modelled 5.2 83
PDB header:splicing
Chain: S: PDB Molecule:pre-mrna-processing factor 17;
PDBTitle: cryo-em structure of the intron-lariat spliceosome ready for2 disassembly from s.cerevisiae at 3.5 angstrom
46c1z65A_



not modelled 5.1 71
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide

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