Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0611c_(-)_705964_706347
DateFri Jul 26 01:50:17 BST 2019
Unique Job IDf58cce72a0f49c50
SequenceLPDRPQHPTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.309 Y:19.643 Z:35.114
Model (left) based on template c3p8dB_
Top template information
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
Confidence and coverage
Confidence: 84.8% Coverage: 26%
33 residues ( 26% of your sequence) have been modelled with 84.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3p8dB_
84.8 27
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
2c2ldmA_
82.3 23
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
3c3qiiA_
78.3 21
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
4c4tseA_
75.0 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mib repeat domain of mind bomb 1
5c3l2uA_
51.9 17
PDB header:recombination/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv)2 intasome in complex with magnesium and gs91373 (elvitegravir)
6c1xniI_
49.1 24
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
7c2equA_
46.4 13
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
8c4uc4A_
42.5 22
PDB header:replication
Chain: A: PDB Molecule:lysine-specific demethylase 4b;
PDBTitle: crystal structure of hybrid tudor domain of human lysine demethylase2 kdm4b
9c5ld2D_
41.1 21
PDB header:hydrolase
Chain: D: PDB Molecule:recbcd enzyme subunit recd;
PDBTitle: cryo-em structure of recbcd+dna complex revealing activated nuclease2 domain
10c3dlmA_
38.1 20
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
11c5zwxB_
37.7 19
PDB header:gene regulation
Chain: B: PDB Molecule:duf724 domain-containing protein 6-like;
PDBTitle: crystal structure of raphanus sativus agdp1 agd12 in complex with an2 h3k9me2 peptide
12c2oviA_
35.4 15
PDB header:ligand binding protein, metal transport
Chain: A: PDB Molecule:hypothetical protein chux;
PDBTitle: structure of the heme binding protein chux
13c1vw4G_
33.9 35
PDB header:ribosome
Chain: G: PDB Molecule:54s ribosomal protein l50, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
14c2qqsB_
33.1 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
15c2xdpA_
30.8 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
16d1e2wa2
30.3 38
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
17d2hqva1
28.1 17
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:ChuX-like
18c2ph0A_
28.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia carotovora.2 nesg target ewr41.
19d1ci3m2
27.8 24
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
20c5zwzA_
27.7 18
PDB header:gene regulation
Chain: A: PDB Molecule:agenet domain-containing protein;
PDBTitle: crystal structure of arabidopsis thaliana agdp1 agd34
21d1twia1
not modelled 27.2 23
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Alanine racemase C-terminal domain-like
Family:Eukaryotic ODC-like
22d1cqua_
not modelled 26.3 26
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
23c2zfdB_
not modelled 25.0 18
PDB header:signaling protein/transferase
Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90;
PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14
24c1e2vB_
not modelled 24.6 38
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
25c5v77B_
not modelled 24.2 43
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from neisseria2 gonorrhoeae
26c3pifD_
not modelled 24.1 27
PDB header:hydrolase
Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1);
PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese
27c4ro6A_
not modelled 22.9 12
PDB header:lyase
Chain: A: PDB Molecule:lactoylglutathione lyase;
PDBTitle: crystal structure of glyoxalase i from zea mays
28d2gycf2
not modelled 22.6 32
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
29c1q90A_
not modelled 22.6 38
PDB header:photosynthesis
Chain: A: PDB Molecule:apocytochrome f;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
30d1twua_
not modelled 21.4 19
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Hypothetical protein YycE
31c3zi1A_
not modelled 21.3 21
PDB header:isomerase
Chain: A: PDB Molecule:glyoxalase domain-containing protein 4;
PDBTitle: crystal structure of human glyoxalase domain-containing protein 42 (glod4)
32d1edqa1
not modelled 20.5 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
33d2j01i2
not modelled 19.5 42
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
34c5exvD_
not modelled 18.3 19
PDB header:heme-binding protein
Chain: D: PDB Molecule:hemin-degrading hems.chux domain protein;
PDBTitle: crystal structure of heme binding protein hutx from vibrio cholerae
35c4xpmB_
not modelled 18.2 24
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein ycr075w-a;
PDBTitle: crystal structure of ego-tc
36d2do3a1
not modelled 17.7 19
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
37d2diqa1
not modelled 17.7 22
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
38d2hqxa1
not modelled 17.6 11
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
39c2hqxB_
not modelled 17.6 11
PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
40c2xk0A_
not modelled 17.5 16
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
41c4ce4I_
not modelled 16.8 37
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
42c1mg7B_
not modelled 16.7 24
PDB header:gene regulation
Chain: B: PDB Molecule:early switch protein xol-1 2.2k splice form;
PDBTitle: crystal structure of xol-1
43d2hbaa1
not modelled 16.2 26
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
44c1ssfA_
not modelled 16.2 20
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
45c2qghA_
not modelled 16.1 25
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine
46c2ky9A_
not modelled 15.1 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydhk;
PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518
47c4a4fA_
not modelled 14.8 15
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
48c4q5wB_
not modelled 14.7 20
PDB header:transcription
Chain: B: PDB Molecule:maternal protein tudor;
PDBTitle: crystal structure of extended-tudor 9 of drosophila melanogaster
49d2d9ta1
not modelled 14.4 22
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
50c6dgaA_
not modelled 14.3 16
PDB header:unknown function
Chain: A: PDB Molecule:rpfr;
PDBTitle: cronobacter turicensis rpfr quorum-sensing receptor rpff interaction2 domain
51c4wyqB_
not modelled 14.0 20
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the dicer-trbp interface
52c4v19I_
not modelled 13.6 37
PDB header:ribosome
Chain: I: PDB Molecule:mitoribosomal protein bl9m, mrpl9;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
53c4l0jA_
not modelled 13.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: structure of a translocation signal domain mediating conjugative2 transfer by type iv secretion systems
54c2jtdA_
not modelled 13.3 16
PDB header:cell adhesion
Chain: A: PDB Molecule:myomesin-1;
PDBTitle: skelemin immunoglobulin c2 like domain 4
55c5nleC_
not modelled 13.3 19
PDB header:sugar binding protein
Chain: C: PDB Molecule:galectin;
PDBTitle: chicken grifin (crystallisation ph: 8.0)
56c2d9tA_
not modelled 13.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
57d2r5fa1
not modelled 12.7 29
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
58c2hfgR_
not modelled 12.4 83
PDB header:immune system
Chain: R: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of hbr3 bound to cb3s-fab
59c1osxA_
not modelled 12.3 55
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily
PDBTitle: solution structure of the extracellular domain of blys2 receptor 3 (br3)
60d1osxa_
not modelled 12.3 55
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:BAFF receptor-like
61c6mzoA_
not modelled 12.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:inactive zymogen c11 protease;
PDBTitle: x-ray structure of an inactive zymogen c11 protease from2 parabacteroides distasonis
62c2kaoA_
not modelled 12.1 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1;
PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)
63d1oqen_
not modelled 11.9 83
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:BAFF receptor-like
64c1oqeN_
not modelled 11.9 83
PDB header:immune system
Chain: N: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
65c2kt7A_
not modelled 11.9 11
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
66c5ohoB_
not modelled 11.6 20
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: crystal structure of the kowx-kow4 domain of human dsif
67d2b2na1
not modelled 11.4 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
68c5o60H_
not modelled 11.3 32
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l9;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
69c1p0t0_
not modelled 11.2 50
PDB header:protein binding
Chain: 0: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
70c1p0tu_
not modelled 11.2 50
PDB header:protein binding
Chain: U: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
71c1p0tR_
not modelled 11.2 50
PDB header:protein binding
Chain: R: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
72c1p0tf_
not modelled 11.2 50
PDB header:protein binding
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
73c1p0tS_
not modelled 11.2 50
PDB header:protein binding
Chain: S: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
74c1p0tI_
not modelled 11.2 50
PDB header:protein binding
Chain: I: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
75c1p0tL_
not modelled 11.2 50
PDB header:protein binding
Chain: L: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
76c1p0t6_
not modelled 11.2 50
PDB header:protein binding
Chain: 6: PDB Molecule:
PDB Fragment:residues 1-63; PDBTitle: crystal structure of the baff-baff-r complex (part ii)
77c1p0th_
not modelled 11.2 50
PDB header:protein binding
Chain: H: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
78c1p0td_
not modelled 11.2 50
PDB header:protein binding
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
79c1p0t4_
not modelled 11.2 50
PDB header:protein binding
Chain: 4: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
80c1p0t5_
not modelled 11.2 50
PDB header:protein binding
Chain: 5: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
81c1p0tq_
not modelled 11.2 50
PDB header:protein binding
Chain: Q: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
82c1p0tY_
not modelled 11.2 50
PDB header:protein binding
Chain: Y: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
83c1p0tn_
not modelled 11.2 50
PDB header:protein binding
Chain: N: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
84c1p0tK_
not modelled 11.2 50
PDB header:protein binding
Chain: K: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
85c1p0tt_
not modelled 11.2 50
PDB header:protein binding
Chain: T: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
86c1p0tb_
not modelled 11.2 50
PDB header:protein binding
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
87c1p0tE_
not modelled 11.2 50
PDB header:protein binding
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
88c1p0tc_
not modelled 11.2 50
PDB header:protein binding
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
89c1p0ta_
not modelled 11.2 50
PDB header:protein binding
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
90c1p0to_
not modelled 11.2 50
PDB header:protein binding
Chain: O: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
91c1p0tv_
not modelled 11.2 50
PDB header:protein binding
Chain: V: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
92c1p0tG_
not modelled 11.2 50
PDB header:protein binding
Chain: G: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
93c1p0tj_
not modelled 11.2 50
PDB header:protein binding
Chain: J: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
94c1p0tQ_
not modelled 11.2 50
PDB header:protein binding
Chain: Q: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
95c1p0tT_
not modelled 11.2 50
PDB header:protein binding
Chain: T: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
96c1p0tD_
not modelled 11.2 50
PDB header:protein binding
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
97c1p0te_
not modelled 11.2 50
PDB header:protein binding
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
98c1p0t2_
not modelled 11.2 50
PDB header:protein binding
Chain: 2: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)
99c1p0t7_
not modelled 11.2 50
PDB header:protein binding
Chain: 7: PDB Molecule:
PDBTitle: crystal structure of the baff-baff-r complex (part ii)

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