Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0612_(-)_706327_706932
DateFri Jul 26 01:50:17 BST 2019
Unique Job ID31c021c75d331838
SequenceVLGPIRQPRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:11.713 Y:14.004 Z:12.667
Model (left) based on template c5h7yB_
Top template information
PDB header:hydrolase inhibitor/peptide
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of immunity protein tplei of t6ss from pseudomonas2 aeruginosa complexed with "l" peptide
Confidence and coverage
Confidence: 56.3% Coverage: 4%
9 residues ( 4% of your sequence) have been modelled with 56.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5h7yB_
56.3 67
PDB header:hydrolase inhibitor/peptide
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of immunity protein tplei of t6ss from pseudomonas2 aeruginosa complexed with "l" peptide
2c5nj8D_
38.9 15
PDB header:transcription
Chain: D: PDB Molecule:aryl hydrocarbon receptor nuclear translocator;
PDBTitle: structural basis for aryl hydrocarbon receptor mediated gene2 activation
3c3o0yC_
38.0 21
PDB header:lipid binding protein
Chain: C: PDB Molecule:lipoprotein;
PDBTitle: the crystal structure of the putative lipoprotein from colwellia2 psychrerythraea
4d2gy9t1
31.3 17
Fold:Spectrin repeat-like
Superfamily:Ribosomal protein S20
Family:Ribosomal protein S20
5c2rfpA_
28.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
6c6oqqA_
25.1 33
PDB header:transferase
Chain: A: PDB Molecule:legionella pneumophila sidj;
PDBTitle: legionella pneumophila sidj/saccharomyces cerevisiae calmodulin2 complex
7c5o5jT_
21.3 14
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s20;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
8d2uubt1
19.7 20
Fold:Spectrin repeat-like
Superfamily:Ribosomal protein S20
Family:Ribosomal protein S20
9c4j8cA_
19.5 36
PDB header:chaperone
Chain: A: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
10c4j8cB_
19.5 36
PDB header:chaperone
Chain: B: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
11d1pbya1
18.9 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
12c2choA_
18.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:glucosaminidase;
PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity
13c4uy5A_
14.8 28
PDB header:transferase
Chain: A: PDB Molecule:histidine-specific methyltransferase egtd;
PDBTitle: crystal structure of histidine-specific methyltransferase egtd from2 mycobacterium smegmatis
14c4eqyC_
14.1 24
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of acyl-[acyl-carrier-protein]--udp-n-2 acetylglucosamine o-acyltransferase from burkholderia thailandensis
15c3eukL_
13.4 36
PDB header:cell cycle
Chain: L: PDB Molecule:chromosome partition protein muke;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head domain)-2 atpgammas complex, asymmetric dimer
16c4e18B_
13.2 39
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
17d1ya0a1
12.6 17
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
18c2voyB_
12.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
19c3hjcA_
11.5 18
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 83-1;
PDBTitle: crystal structure of the carboxy-terminal domain of hsp90 from2 leishmania major, lmjf33.0312
20d1sf8a_
11.3 29
Fold:HSP90 C-terminal domain
Superfamily:HSP90 C-terminal domain
Family:HSP90 C-terminal domain
21c4bqqB_
not modelled 11.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: protein crystal structure of the n-terminal and recombinase domains of2 the streptomyces temperate phage serine recombinase, fc31 integrase.
22d1dxsa_
not modelled 11.3 29
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
23c4tvxT_
not modelled 11.1 21
PDB header:
PDB COMPND:
24c2l9uA_
not modelled 10.8 100
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
25c2l9uB_
not modelled 10.8 100
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
26d1jmxa1
not modelled 10.7 14
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
27c6agbH_
not modelled 10.7 21
PDB header:hydrolase/rna
Chain: H: PDB Molecule:ribonucleases p/mrp protein subunit pop8;
PDBTitle: cryo-em structure of yeast ribonuclease p
28c5ah1A_
not modelled 10.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:triacylglycerol lipase;
PDBTitle: structure of esta from clostridium botulinum
29c2k8dA_
not modelled 10.4 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
30d1ewna_
not modelled 10.2 36
Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
31c4oe4A_
not modelled 10.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:delta-1-pyrroline-5-carboxylate dehydrogenase,
PDBTitle: crystal structure of yeast aldh4a1 complexed with nad+
32c3mlpA_
not modelled 10.2 29
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor coe1;
PDBTitle: early b-cell factor 1 (ebf1) bound to dna
33d1x6ma_
not modelled 9.8 20
Fold:Mss4-like
Superfamily:Mss4-like
Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
34c2dajA_
not modelled 9.7 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa0977 protein;
PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human cobl-like 1 protein
35d1tuwa_
not modelled 9.6 35
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Polyketide synthesis cyclase
36c5m73H_
not modelled 9.5 43
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
37c5l85A_
not modelled 9.5 33
PDB header:signaling protein
Chain: A: PDB Molecule:zinc finger hit domain-containing protein 3;
PDBTitle: solution structure of the complex between human znhit3 and nufip12 proteins
38c6gwjD_
not modelled 9.5 33
PDB header:rna binding protein
Chain: D: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: protein complex
39c3hcjB_
not modelled 9.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
40c5yx5B_
not modelled 9.4 19
PDB header:replication
Chain: B: PDB Molecule:49 protein;
PDBTitle: crystal structure of viral parp1 interacting protein in murine2 gammaherpesvirus 68
41c1vdfB_
not modelled 9.4 20
PDB header:extracellular matrix protein
Chain: B: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: assembly domain of cartilage oligomeric matrix protein
42d1l1da_
not modelled 9.4 24
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
43c3s7yX_
not modelled 9.3 30
PDB header:transferase
Chain: X: PDB Molecule:n-acetylglutamate kinase / n-acetylglutamate synthase;
PDBTitle: crystal structure of mmnags in space group p3121 at 4.3 a resolution
44c2kaoA_
not modelled 9.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1;
PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)
45c5m73D_
not modelled 9.1 43
PDB header:rna binding protein
Chain: D: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
46c5zwo9_
not modelled 9.0 14
PDB header:splicing
Chain: 9: PDB Molecule:pre-mrna-splicing factor spp381;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
47c3cezA_
not modelled 9.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
48c2l1uA_
not modelled 8.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial;
PDBTitle: structure-functional analysis of mammalian msrb2 protein
49d1g8qa_
not modelled 8.7 26
Fold:Tetraspanin
Superfamily:Tetraspanin
Family:Tetraspanin
50d2ey4c1
not modelled 8.5 36
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Gar1-like SnoRNP
51d1yt3a2
not modelled 8.5 13
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
52d3gata_
not modelled 8.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
53c6nhwB_
not modelled 8.3 64
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
54c6nhwA_
not modelled 8.3 64
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
55c2hvyB_
not modelled 8.1 36
PDB header:isomerase/biosynthetic protein/rna
Chain: B: PDB Molecule:small nucleolar rnp similar to gar1;
PDBTitle: crystal structure of an h/aca box rnp from pyrococcus furiosus
56d1xm0a1
not modelled 8.1 24
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
57c6nhwC_
not modelled 8.1 64
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
58d2euca1
not modelled 8.1 44
Fold:YfmB-like
Superfamily:YfmB-like
Family:YfmB-like
59c5yudA_
not modelled 8.0 31
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: flagellin derivative in complex with the nlr protein naip5
60c5fa9B_
not modelled 8.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: bifunctional methionine sulfoxide reductase ab (msrab) from treponema2 denticola
61c6ijfA_
not modelled 7.7 40
PDB header:antitoxin
Chain: A: PDB Molecule:tai4;
PDBTitle: crystal structure of the type vi effector-immunity complex (tae4-tai4)2 from agrobacterium tumefaciens
62d2cuqa1
not modelled 7.7 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
63c2rn5B_
not modelled 7.6 31
PDB header:hormone
Chain: B: PDB Molecule:insulin;
PDBTitle: humal insulin mutant b31lys-b32arg
64c1loiA_
not modelled 7.6 30
PDB header:hydrolase
Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1;
PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures
65c3bpjD_
not modelled 7.6 17
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
66c2eapA_
not modelled 7.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:lymphocyte cytosolic protein 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2
67c2kz3A_
not modelled 7.6 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
68c4um2A_
not modelled 7.5 14
PDB header:telomerase-binding protein
Chain: A: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: crystal structure of the tpr domain of smg6
69c3e0mB_
not modelled 7.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
70c2lkqA_
not modelled 7.4 70
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
71d1z21a1
not modelled 7.3 27
Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:YopR Core
72d5gata_
not modelled 7.3 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
73c4e0hA_
not modelled 7.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:mitochondrial fad-linked sulfhydryl oxidase erv1;
PDBTitle: crystal structure of fad binding domain of erv1 from saccharomyces2 cerevisiae
74d2ahob1
not modelled 7.2 14
Fold:SAM domain-like
Superfamily:eIF2alpha middle domain-like
Family:eIF2alpha middle domain-like
75c4dl0I_
not modelled 7.2 23
PDB header:hydrolase
Chain: I: PDB Molecule:v-type proton atpase subunit c;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
76c6a73B_
not modelled 7.1 19
PDB header:signaling protein
Chain: B: PDB Molecule:cop9 signalosome complex subunit 2,endolysin;
PDBTitle: complex structure of csn2 with ip6
77c3uaiC_
not modelled 7.1 29
PDB header:isomerase/chaperone
Chain: C: PDB Molecule:h/aca ribonucleoprotein complex subunit 1;
PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
78c3zey8_
not modelled 7.1 78
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
79c5ch6B_
not modelled 7.0 15
PDB header:transcription
Chain: B: PDB Molecule:frigida;
PDBTitle: crystal structure of frigida flowering-time regulator
80c6nhwD_
not modelled 7.0 64
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
81c6nhwF_
not modelled 7.0 64
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
82c6nhwE_
not modelled 7.0 64
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
83d1w07a2
not modelled 7.0 11
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
84c3h6sE_
not modelled 6.9 28
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:clitocypin analog;
PDBTitle: structure of clitocypin - cathepsin v complex
85d1y0ja1
not modelled 6.8 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
86d1j2za_
not modelled 6.7 18
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
87c2kaeA_
not modelled 6.6 10
PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
88d2bmob1
not modelled 6.6 27
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
89c5vbaA_
not modelled 6.5 35
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
90c5od9B_
not modelled 6.3 18
PDB header:de novo protein hydrolase
Chain: B: PDB Molecule:mid1sc9;
PDBTitle: structure of the engineered metalloesterase mid1sc9
91d2vuti1
not modelled 6.3 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
92c6b5bA_
not modelled 6.2 31
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
93c4k30B_
not modelled 6.2 31
PDB header:transferase
Chain: B: PDB Molecule:n-acetylglutamate synthase, mitochondrial;
PDBTitle: structure of the n-acetyltransferase domain of human n-acetylglutamate2 synthase
94c3jyvN_
not modelled 6.1 67
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
95c2xznN_
not modelled 6.1 67
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
96c5l2rA_
not modelled 6.0 20
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of fumarate hydratase from leishmania major
97c3j20P_
not modelled 5.8 56
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
98c5xxud_
not modelled 5.8 67
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
99c4inmV_
not modelled 5.8 80
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle

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