Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0614_(-)_709359_710351
DateFri Jul 26 01:50:17 BST 2019
Unique Job ID33c4f0cb70df78dc
SequenceLPAIPFQGEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.016 Y:23.696 Z:21.359
Model (left) based on template c6h9cb_
Top template information
PDB header:virus
Chain: B: PDB Molecule:vp4;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
Confidence and coverage
Confidence: 25.8% Coverage: 8%
25 residues ( 8% of your sequence) have been modelled with 25.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6h9cb_
25.8 40
PDB header:virus
Chain: B: PDB Molecule:vp4;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
2c3lf4A_
19.3 32
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
3c4hhsA_
19.2 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-dioxygenase;
PDBTitle: crystal structure of fatty acid alpha-dioxygenase (arabidopsis2 thaliana)
4c2a56A_
18.7 32
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like non-fluorescent chromoprotein fp595 chain 1;
PDBTitle: fluorescent protein asfp595, a143s, on-state, 5min irradiation
5c6h9cA_
17.2 31
PDB header:virus
Chain: A: PDB Molecule:vp4;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
6c6cfzG_
17.0 31
PDB header:nuclear protein
Chain: G: PDB Molecule:hsk3;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
7c4o5pB_
15.1 50
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from pseudomonas2 aeruginosa
8c3ktcB_
14.9 13
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution
9c2a7yA_
14.9 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359;
PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
10d2a7ya1
14.9 37
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Rv2302-like
11c4u39N_
14.7 54
PDB header:cell cycle
Chain: N: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
12c2de0X_
14.7 26
PDB header:transferase
Chain: X: PDB Molecule:alpha-(1,6)-fucosyltransferase;
PDBTitle: crystal structure of human alpha 1,6-fucosyltransferase, fut8
13c2bpa3_
13.9 62
PDB header:virus/dna
Chain: 3: PDB Molecule:protein (subunit of bacteriophage phix174);
PDBTitle: atomic structure of single-stranded dna bacteriophage2 phix174 and its functional implications
14c4wj2A_
11.7 18
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
15c2rpaA_
11.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1;
PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme
16c4kwyB_
9.8 14
PDB header:transport protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (cc_3750) from caulobacter2 crescentus cb15 at 2.40 a resolution
17c3lphD_
9.2 47
PDB header:viral protein
Chain: D: PDB Molecule:protein rev;
PDBTitle: crystal structure of the hiv-1 rev dimer
18d1ey1a_
8.2 13
Fold:NusB-like
Superfamily:NusB-like
Family:Antitermination factor NusB
19c6eb0A_
7.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit;
PDBTitle: structure of 4-hydroxyphenylacetate 3-monooxygenase (hpab), oxygenase2 component from escherichia coli
20c4u39L_
7.8 54
PDB header:cell cycle
Chain: L: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
21d1jvra_
not modelled 7.6 44
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:HTLV-II matrix protein
22c4u39J_
not modelled 7.4 54
PDB header:cell cycle
Chain: J: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
23c3pvdA_
not modelled 6.8 22
PDB header:viral protein
Chain: A: PDB Molecule:capsid;
PDBTitle: crystal structure of p domain dimer of norovirus va207 complexed with2 3'-sialyl-lewis x tetrasaccharide
24c3mzlH_
not modelled 6.8 23
PDB header:protein transport
Chain: H: PDB Molecule:protein transport protein sec31;
PDBTitle: sec13/sec31 edge element, loop deletion mutant
25c3djaA_
not modelled 6.8 21
PDB header:transferase
Chain: A: PDB Molecule:protein ct_858;
PDBTitle: crystal structure of cpaf solved with mad
26c4oo2D_
not modelled 6.7 30
PDB header:oxidoreductase
Chain: D: PDB Molecule:chlorophenol-4-monooxygenase;
PDBTitle: streptomyces globisporus c-1027 fad dependent (s)-3-chloro-β-2 tyrosine-s-sgcc2 c-5 hydroxylase sgcc apo form
27d1n26a1
not modelled 6.6 78
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
28c2vwaE_
not modelled 6.3 46
PDB header:unknown function
Chain: E: PDB Molecule:putative uncharacterized protein pf13_0012;
PDBTitle: crystal structure of a sporozoite protein essential for2 liver stage development of malaria parasite
29c2pm7A_
not modelled 6.2 21
PDB header:protein transport
Chain: A: PDB Molecule:protein transport protein sec31;
PDBTitle: crystal structure of yeast sec13/31 edge element of the copii2 vesicular coat, selenomethionine version
30c3i38C_
not modelled 5.8 18
PDB header:chaperone
Chain: C: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
31c3i38E_
not modelled 5.8 18
PDB header:chaperone
Chain: E: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
32c1vdbA_
not modelled 5.7 44
PDB header:transcription
Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1;
PDBTitle: nmr structure of fmbp-1 tandem repeat 1 in 30%(v/v) tfe2 solution
33c1vd7A_
not modelled 5.7 44
PDB header:transcription
Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1;
PDBTitle: solution structure of fmbp-1 tandem repeat 1
34d1dj3a_
not modelled 5.5 70
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
35d1p9ba_
not modelled 5.5 60
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
36c6f46A_
not modelled 5.5 47
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
37c4adjB_
not modelled 5.5 45
PDB header:viral protein
Chain: B: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: crystal structure of the rubella virus glycoprotein e1 in its2 post-fusion form crystallized in presence of 1mm of calcium acetate
38c2k42B_
not modelled 5.4 35
PDB header:signaling protein
Chain: B: PDB Molecule:espfu;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
39c4wxmD_
not modelled 5.4 21
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator fleq;
PDBTitle: fleq rec domain from pseudomonas aeruginosa pao1
40d1iwea_
not modelled 5.1 60
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like

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