Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0615_(-)_710348_710590
DateFri Jul 26 01:50:17 BST 2019
Unique Job IDd50b257d6098f85b
SequenceVMDVLAAGIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.866 Y:27.048 Z:25.984
Model (left) based on template c1a87A_
Top template information
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
Confidence and coverage
Confidence: 48.6% Coverage: 51%
41 residues ( 51% of your sequence) have been modelled with 48.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1a87A_



48.6 22
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
2d1a87a_



48.6 22
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
3d1rh1a2



48.5 30
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
4c3fewX_



47.0 32
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
5d1cola_



43.2 19
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
6d1ciia1



30.2 34
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
7c6jnyA_



22.4 63
PDB header:transcription
Chain: A: PDB Molecule:antiterminator q protein;
PDBTitle: crystal structure of bacteriophage 21 q protein
8c1rh1A_



14.5 28
PDB header:antibiotic
Chain: A: PDB Molecule:colicin b;
PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
9c5yq72_



13.4 31
PDB header:photosynthesis
Chain: 2: PDB Molecule:beta subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
10c2i88A_



11.6 26
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
11c4z9cB_



10.7 20
PDB header:transferase
Chain: B: PDB Molecule:subtilase cytotoxin subunit b-like protein;
PDBTitle: ecpltab oxidized
12c1wazA_



9.4 29
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
13c2h3oA_



8.9 29
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
14c5vobE_



8.1 21
PDB header:viral protein/immune system
Chain: E: PDB Molecule:envelope glycoprotein ul131a;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 8i21
15d1fexa_



6.5 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
16c2atmA_



6.4 44
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure of the recombinant allergen ves v 2
17d1fcqa_



5.8 44
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Bee venom hyaluronidase
18c3bv8A_



5.5 40
PDB header:transferase
Chain: A: PDB Molecule:tetrahydrodipicolinate acetyltransferase;
PDBTitle: crystal structure of the n-terminal domain of tetrahydrodipicolinate2 acetyltransferase from staphylococcus aureus
19c2xf5C_



5.3 100
PDB header:viral protein
Chain: C: PDB Molecule:gp23.1;
PDBTitle: crystal structure of bacillus subtilis spp1 phage gp23.1, a putative2 chaperone.
20c1mzwB_



5.3 41
PDB header:isomerase
Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein;
PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide
21c1fcuA_



not modelled 5.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase
22d1hfxa_



not modelled 5.2 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below