Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0616A_(RVBD0616A)_710785_711012
DateFri Jul 26 01:50:17 BST 2019
Unique Job ID06a6648e9a50493a
SequenceVRTTIDLPQD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.827 Y:35.026 Z:37.869
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 82.5% Coverage: 64%
48 residues ( 64% of your sequence) have been modelled with 82.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_
82.5 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2d2bj7a1
57.0 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
3c2ca9B_
52.9 26
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
4d2hzab1
49.6 31
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
5c1q5vB_
49.4 28
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
6c2bj3D_
45.8 26
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
7d2hzaa1
40.0 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
8c2k9iB_
25.2 29
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
9c6a7vU_
22.6 28
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
10c6g1nB_
14.9 21
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
11d1lbqa_
13.7 38
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
12d1bg3a1
12.6 27
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
13c4jjaA_
11.1 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0379) from2 bacteroides fragilis nctc 9343 at 1.30 a resolution
14c4k05B_
8.4 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical exported protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0371) from2 bacteroides fragilis nctc 9343 at 1.65 a resolution
15c2j8aA_
8.2 16
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4
PDBTitle: x-ray structure of the n-terminus rrm domain of set1
16d1xhna1
7.3 27
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
17d2hrca1
7.2 35
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
18c2k48A_
7.1 31
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein
19d1mnta_
6.8 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c2lnvA_
6.5 27
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein c;
PDBTitle: solution structure of gspc-hr of typeii secretion system
21c6etxR_
not modelled 6.2 45
PDB header:dna binding protein
Chain: R: PDB Molecule:ino80 complex subunit b;
PDBTitle: cryo-em structure of the human ino80 complex bound to nucleosome
22c4d8jD_
not modelled 5.5 33
PDB header:dna binding protein
Chain: D: PDB Molecule:macrodomain ter protein;
PDBTitle: structure of e. coli matp-mats complex
23c3e7hA_
not modelled 5.4 16
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: the crystal structure of the beta subunit of the dna-directed rna2 polymerase from vibrio cholerae o1 biovar eltor
24c3dnhB_
not modelled 5.3 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58

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