Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0617_(-)_711009_711410
DateFri Jul 26 01:50:18 BST 2019
Unique Job IDbfbd01529d9a995e
SequenceVTVLLDANVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.650 Y:36.795 Z:47.455
Model (left) based on template c3zvkC_
Top template information
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
Confidence and coverage
Confidence: 99.9% Coverage: 95%
127 residues ( 95% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zvkC_



99.9 10
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
2c5x3tD_



99.8 17
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
3c3tndC_



99.8 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
4c6nklA_



99.8 13
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
5d2fe1a1



99.8 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c2fe1A_



99.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
7c5l6mC_



99.8 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
8c5wzfB_



99.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
9c4xgrG_



99.8 10
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
10c6a7vG_



99.8 13
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
11c4chgC_



99.8 12
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
12d2h1ca1



99.7 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c3h87B_



99.7 14
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
14c5sv2A_



99.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
15d1v96a1



99.6 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c3dboB_



99.6 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
17d1y82a1



99.5 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1v8pa_



99.4 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c1v8pK_



99.4 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
20d1w8ia_



99.3 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c3i8oA_



not modelled 98.7 11
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c3ix7A_



not modelled 98.5 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23d1o4wa_



not modelled 98.2 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5ywwA_



not modelled 97.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c5f4hF_



not modelled 97.8 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2lcqA_



not modelled 97.5 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.3 16
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 96.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 95.7 22
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c4mj7B_



not modelled 91.1 14
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 82.3 10
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c6g5iy_



not modelled 78.3 25
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
33c3v33A_



not modelled 74.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3v32B_



not modelled 73.7 30
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
35c2mdtA_



not modelled 18.9 18
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
36c3al0B_



not modelled 8.5 19
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
37c2g5iB_



not modelled 6.5 20
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
38c3h0mE_



not modelled 6.4 19
PDB header:ligase
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
39c3kfuF_



not modelled 6.3 11
PDB header:ligase/rna
Chain: F: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
40c4wj3K_



not modelled 6.1 19
PDB header:ligase/rna
Chain: K: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
41c4wj3H_



not modelled 6.0 19
PDB header:ligase/rna
Chain: H: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
42c4wj3E_



not modelled 6.0 19
PDB header:ligase/rna
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
43c4wj3B_



not modelled 6.0 19
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
44c3zddA_



not modelled 5.7 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium

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