Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0620_(galK)_712719_713810
DateFri Jul 26 01:50:18 BST 2019
Unique Job ID0285b64a439ebc7e
SequenceMTVSYGAPGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.792 Y:58.728 Z:53.360
Model (left) based on template c1pieA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:galactokinase;
PDBTitle: crystal structure of lactococcus lactis galactokinase2 complexed with galactose
Confidence and coverage
Confidence:100.0% Coverage: 98%
356 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1pieA_



100.0 32
PDB header:transferase
Chain: A: PDB Molecule:galactokinase;
PDBTitle: crystal structure of lactococcus lactis galactokinase2 complexed with galactose
2c2aj4B_



100.0 31
PDB header:transferase
Chain: B: PDB Molecule:galactokinase;
PDBTitle: crystal structure of saccharomyces cerevisiae galactokinase2 in complex with galactose and mg:amppnp
3c3v2uC_



100.0 27
PDB header:transcription
Chain: C: PDB Molecule:protein gal3;
PDBTitle: crystal structure of the yeast gal regulon complex of the repressor,2 gal80p, and the transducer, gal3p, with galactose and atp
4c1wuuA_



100.0 35
PDB header:transferase
Chain: A: PDB Molecule:galactokinase;
PDBTitle: crystal structure of human galactokinase complexed with2 mgamppnp and galactose
5c2a2cA_



100.0 27
PDB header:transferase
Chain: A: PDB Molecule:n-acetylgalactosamine kinase;
PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate
6c2cz9A_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:probable galactokinase;
PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi
7c4ut4B_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:putative sugar kinase;
PDBTitle: burkholderia pseudomallei heptokinase wcbl, d-mannose complex.
8c2r42A_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: the biochemical and structural basis for feedback2 inhibition of mevalonate kinase and isoprenoid metabolism
9c2hfuB_



100.0 19
PDB header:transferase
Chain: B: PDB Molecule:mevalonate kinase, putative;
PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate
10c3k17A_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:lin0012 protein;
PDBTitle: crystal structure of a lin0012 protein from listeria innocua
11c5yysC_



100.0 17
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis
12c4n3oB_



100.0 21
PDB header:transferase
Chain: B: PDB Molecule:putative d-glycero-d-manno-heptose 7-phosphate kinase;
PDBTitle: 2.4 angstrom resolution crystal structure of putative sugar kinase2 from campylobacter jejuni.
13c4hacA_



100.0 26
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of the mevalonate kinase from an archaeon2 methanosarcina mazei
14c1kkhA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase
15c2x7iA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252
16c1k47F_



100.0 16
PDB header:transferase
Chain: F: PDB Molecule:phosphomevalonate kinase;
PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk)
17c2oi2A_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:mevalonate kinase;
PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate
18c3k85B_



100.0 19
PDB header:transferase
Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase;
PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron
19c3pygA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol kinase;
PDBTitle: mycobacterium tuberculosis 4-diphosphocytidyl-2-c-methyl-d-erythritol2 kinase (ispe) in complex with adp
20c4p52A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase from cytophaga hutchinsonii2 atcc 33406, nysgrc target 032717.
21d1piea1



not modelled 100.0 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
22c1fwlD_



not modelled 100.0 19
PDB header:transferase
Chain: D: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase
23c4rpfA_



not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: crystal structure of homoserine kinase from yersinia pestis nepal516,2 nysgrc target 032715
24d1wuua1



not modelled 100.0 35
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
25c4z7cA_



not modelled 100.0 14
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: diphosphomevalonate decarboxylase from the sulfolobus solfataricus,2 space group h32
26c6n0yB_



not modelled 100.0 17
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: crystal structure of anaerolinea thermophila mevalonate 5-phosphate2 decarboxylase complexed with (r)-mvapp
27c5v2lA_



not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:mevalonate diphosphate decarboxylase;
PDBTitle: mevalonate diphosphate mediated atp binding mechanism of the2 mevalonate diphosphate decarboxylase from enterococcus faecalis
28d1piea2



not modelled 100.0 30
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
29c2gs8A_



not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase;
PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes
30d1s4ea2



not modelled 100.0 30
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
31c2hk3A_



not modelled 100.0 15
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase;
PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form)
32c3hulA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes
33d1s4ea1



not modelled 100.0 35
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
34d1wuua2



not modelled 100.0 37
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
35d1kkha1



not modelled 100.0 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
36c6cyzA_



not modelled 100.0 21
PDB header:transferase
Chain: A: PDB Molecule:homoserine kinase;
PDBTitle: mycobacterial homoserine kinase thrb in complex with amppnp
37c2v34B_



not modelled 100.0 15
PDB header:transferase
Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase;
PDBTitle: ispe in complex with cytidine and ligand
38d1kvka1



not modelled 100.0 23
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
39c5watB_



not modelled 100.0 19
PDB header:transferase
Chain: B: PDB Molecule:homoserine kinase;
PDBTitle: corynebacterium glutamicum full length homoserine kinase
40c1uekA_



not modelled 100.0 21
PDB header:transferase
Chain: A: PDB Molecule:4-(cytidine 5'-diphospho)-2c-methyl-d-erythritol
PDBTitle: crystal structure of 4-(cytidine 5'-diphospho)-2c-methyl-d-2 erythritol kinase
41c1oj4B_



not modelled 100.0 19
PDB header:transferase
Chain: B: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol
PDBTitle: ternary complex of2 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
42d1k47a1



not modelled 100.0 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
43c3ltoB_



not modelled 100.0 14
PDB header:lyase
Chain: B: PDB Molecule:mevalonate diphosphate decarboxylase;
PDBTitle: crystal structure of a mevalonate diphosphate decarboxylase2 from legionella pneumophila
44d1h72c1



not modelled 99.9 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
45d1oj4a1



not modelled 99.9 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
46d1kvka2



not modelled 99.9 16
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
47d1k47a2



not modelled 99.8 15
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
48c2hkeB_



not modelled 99.8 15
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative;
PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei
49d1ueka1



not modelled 99.8 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
50d1kkha2



not modelled 99.8 23
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
51c1fi4A_



not modelled 99.7 16
PDB header:lyase
Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase;
PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution.
52c6n10A_



not modelled 99.6 17
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase mvd1, peroxisomal;
PDBTitle: crystal structure of arabidopsis thaliana mevalonate 5-diphosphate2 decarboxylase 1 complexed with (r)-mvapp
53d1fi4a1



not modelled 99.5 18
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
54c3f0nB_



not modelled 99.3 20
PDB header:lyase
Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase;
PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase
55c4rksB_



not modelled 99.3 11
PDB header:transferase
Chain: B: PDB Molecule:putative uncharacterized protein ta1305;
PDBTitle: crystal structure of mevalonate-3-kinase from thermoplasma acidophilum2 (mevalonate bound)
56d1h72c2



not modelled 99.1 18
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Homoserine kinase
57d1ueka2



not modelled 98.0 21
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
58d1oj4a2



not modelled 96.6 24
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
59d1fi4a2



not modelled 93.7 13
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate 5-diphosphate decarboxylase
60c3c7bA_



not modelled 58.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
61d2cz4a1



not modelled 53.2 16
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
62d2ns1b1



not modelled 45.1 21
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
63c2v4jA_



not modelled 41.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
64c5d4pA_



not modelled 41.0 18
PDB header:signaling protein
Chain: A: PDB Molecule:putative nitrogen regulatory protein p-ii glnb;
PDBTitle: structure of cpii bound to adp and bicarbonate, from thiomonas2 intermedia k12
65c4rleA_



not modelled 39.9 10
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yaaq;
PDBTitle: crystal structure of the c-di-amp binding pii-like protein dara
66c2y9jt_



not modelled 39.1 12
PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
67c3bzqA_



not modelled 38.6 21
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis
68c4w8yA_



not modelled 38.1 25
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr2;
PDBTitle: structure of full length cmr2 from pyrococcus furiosus (manganese2 bound form)
69c4rwwB_



not modelled 36.6 10
PDB header:protein binding
Chain: B: PDB Molecule:lmo2692 protein;
PDBTitle: crystal structure of l. monocytogenes psta in complex with cyclic-di-2 amp
70d1vfja_



not modelled 34.4 12
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
71d2piia_



not modelled 33.3 23
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
72c2j9dG_



not modelled 32.2 13
PDB header:membrane transport
Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like
PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake
73d3c7bb2



not modelled 30.7 10
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
74c3ncpD_



not modelled 29.1 14
PDB header:signaling protein
Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2);
PDBTitle: glnk2 from archaeoglobus fulgidus
75d1mg7a1



not modelled 27.9 13
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Early switch protein XOL-1, N-terminal domain
76c3o8wA_



not modelled 25.8 19
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1);
PDBTitle: archaeoglobus fulgidus glnk1
77c3mhyC_



not modelled 25.3 22
PDB header:signaling protein
Chain: C: PDB Molecule:pii-like protein pz;
PDBTitle: a new pii protein structure
78c4r25A_



not modelled 25.0 12
PDB header:transcription
Chain: A: PDB Molecule:nitrogen regulatory pii-like protein;
PDBTitle: structure of b. subtilis glnk
79c4ozlA_



not modelled 25.0 21
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: glnk2 from haloferax mediterranei complexed with amp
80d1qy7a_



not modelled 24.8 20
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
81c4wk1A_



not modelled 23.8 14
PDB header:signaling protein
Chain: A: PDB Molecule:psta;
PDBTitle: crystal structure of staphylococcus aureus psta in complex with c-di-2 amp
82c3m05A_



not modelled 22.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pepe_1480;
PDBTitle: the crystal structure of a functionally unknown protein pepe_1480 from2 pediococcus pentosaceus atcc 25745
83c4usiC_



not modelled 22.8 16
PDB header:signaling protein
Chain: C: PDB Molecule:nitrogen regulatory protein pii;
PDBTitle: nitrogen regulatory protein pii from chlamydomonas2 reinhardtii in complex with mgatp and 2-oxoglutarate
84d2cp9a1



not modelled 22.0 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TS-N domain
85d2pv7a1



not modelled 21.2 12
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
86d1ul3a_



not modelled 21.1 21
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
87d1zj8a1



not modelled 21.0 21
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
88d1hwua_



not modelled 20.6 18
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
89d2bv3a3



not modelled 19.9 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
90d2cl5a1



not modelled 19.7 10
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
91c1yj7A_



not modelled 19.3 8
PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
92d1lb2b_



not modelled 18.0 13
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
93c5i2dA_



not modelled 16.5 15
PDB header:transcription/dna/rna
Chain: A: PDB Molecule:dna-directed rna polymerase subunit alpha;
PDBTitle: crystal structure of t. thermophilus tthb099 class ii transcription2 activation complex: tap-rpo
94d1cooa_



not modelled 15.9 13
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
95d1xd7a_



not modelled 14.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
96d1z3eb1



not modelled 14.1 11
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
97c3wz2C_



not modelled 13.2 13
PDB header:chaperone
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pyrococcus furiosus pbaa, an archaeal homolog of2 proteasome-assembly chaperone
98d2p90a1



not modelled 13.1 16
Fold:Phosphorylase/hydrolase-like
Superfamily:Cgl1923-like
Family:Cgl1923-like
99d1a6qa1



not modelled 12.3 26
Fold:Another 3-helical bundle
Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain
Family:Protein serine/threonine phosphatase 2C, C-terminal domain

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