Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0622_(-)_715373_716320
DateFri Jul 26 01:50:18 BST 2019
Unique Job IDe43ef4750064cbfe
SequenceMSFCVYCGAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.847 Y:19.398 Z:15.992
Model (left) based on template c3cngC_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
Confidence and coverage
Confidence: 78.7% Coverage: 7%
22 residues ( 7% of your sequence) have been modelled with 78.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cngC_
78.7 45
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
2d1vdda_
77.2 20
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
3d1iq8a3
74.4 24
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
4c1vddC_
71.8 20
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
5d1pfva3
67.9 32
Fold:Rubredoxin-like
Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain
Family:Methionyl-tRNA synthetase (MetRS), Zn-domain
6c5zvqA_
65.4 25
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
7c3zv0D_
64.6 20
PDB header:cell cycle
Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4;
PDBTitle: structure of the shq1p-cbf5p complex
8c5flmI_
59.6 25
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
9c1zxuA_
56.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g01750 protein;
PDBTitle: x-ray structure of protein from arabidopsis thaliana at5g01750
10d2q4ma1
56.0 18
Fold:Tubby C-terminal domain-like
Superfamily:Tubby C-terminal domain-like
Family:At5g01750-like
11c6cnbR_
53.9 33
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
12c1i3qI_
51.3 29
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
13c3gzkA_
50.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structure of a. acidocaldarius cellulase cela
14d1r3ea1
47.8 22
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
15c3ve5D_
46.6 16
PDB header:recombination
Chain: D: PDB Molecule:recombination protein recr;
PDBTitle: structure of recombination mediator protein recr16-196 deletion mutant
16d1k8ia2
46.0 44
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
17d2as0a1
43.5 35
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
18c3h0gI_
39.0 24
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
19c2p9rA_
38.1 21
PDB header:signaling protein
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3
20c5z2vB_
37.6 24
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
21c4c2mX_
not modelled 36.7 38
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
22d2apoa1
not modelled 36.6 32
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
23c2gb5B_
not modelled 35.7 38
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
24c3hkzP_
not modelled 34.7 50
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
25c6o3pA_
not modelled 34.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
26d2fiya1
not modelled 31.3 35
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
27d2j0151
not modelled 29.5 33
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
28c3k7aM_
not modelled 29.1 28
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
29c4zzkA_
not modelled 29.0 17
PDB header:motor protein
Chain: A: PDB Molecule:basal-body rod modification protein flgd;
PDBTitle: crystal structure of truncated flgd (monoclinic form) from the human2 pathogen helicobacter pylori
30d2k4xa1
not modelled 28.7 63
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
31c1oazH_
not modelled 28.1 16
PDB header:immune system
Chain: H: PDB Molecule:immunoglobulin e;
PDBTitle: ige fv spe7 complexed with a recombinant thioredoxin
32d2ey4a1
not modelled 27.2 23
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
33d1ooya1
not modelled 26.1 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
34d2zjrz1
not modelled 26.0 25
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
35c6em5l_
not modelled 25.8 17
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l13-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
36c5fjaI_
not modelled 25.8 45
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
37c3j3v0_
not modelled 25.4 38
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
38d1q7ha1
not modelled 25.0 23
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
39c2apoA_
not modelled 24.9 26
PDB header:isomerase/rna binding protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
40d1hdma2
not modelled 24.1 29
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
41c4bpo9_
not modelled 23.2 47
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
42d1x63a2
not modelled 22.7 56
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
43c2ey4A_
not modelled 21.2 26
PDB header:isomerase/biosynthetic protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
44c2wjyA_
not modelled 20.9 30
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
45c4v1oM_
not modelled 20.9 28
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
46c2k9yB_
not modelled 19.3 55
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
47c2k9yA_
not modelled 19.3 55
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
48d2cu8a1
not modelled 19.1 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
49c4iu2A_
not modelled 19.0 14
PDB header:structural protein
Chain: A: PDB Molecule:cell-wall anchoring protein;
PDBTitle: cohesin-dockerin -x domain complex from ruminococcus flavefacience
50d1owqa2
not modelled 19.0 28
Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
51d1zbfa1
not modelled 18.8 29
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
52d2pi6a2
not modelled 17.1 31
Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
53c5waiF_
not modelled 17.1 25
PDB header:transcription
Chain: F: PDB Molecule:polycomb protein suz12;
PDBTitle: crystal structure of a suz12-rbbp4-jarid2-aebp2 heterotetrameric2 complex
54c5fz5M_
not modelled 16.9 28
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
55c2l7xA_
not modelled 16.7 31
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: crimean congo hemorrhagic fever gn zinc finger
56d1hjxa2
not modelled 16.7 34
Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
57c3wwnB_
not modelled 16.6 53
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
58c2xzlA_
not modelled 16.6 30
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
59c3osvC_
not modelled 16.4 16
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
60d1k78a1
not modelled 16.4 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
61c4pchE_
not modelled 16.0 50
PDB header:viral protein
Chain: E: PDB Molecule:vp1;
PDBTitle: structure of human polyomavirus 7 (hpyv7) vp1 pentamer
62c4pcgD_
not modelled 15.9 50
PDB header:viral protein
Chain: D: PDB Molecule:vp1;
PDBTitle: structure of human polyomavirus 6 (hpyv6) vp1 pentamer
63c2q07A_
not modelled 15.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af0587;
PDBTitle: crystal structure of af0587, a protein of unknown function
64c3k1fM_
not modelled 15.5 33
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
65c6elhA_
not modelled 15.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
66d1dgsa1
not modelled 15.3 26
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
67d2qam01
not modelled 14.9 22
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
68d2o14a1
not modelled 14.5 29
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:YxiM N-terminal domain-like
69c4qiwP_
not modelled 14.5 50
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
70c2g9tT_
not modelled 14.3 36
PDB header:viral protein
Chain: T: PDB Molecule:
PDBTitle: crystal structure of the sars coronavirus nsp10 at 2.1a
71c3bwrC_
not modelled 14.1 50
PDB header:viral protein
Chain: C: PDB Molecule:capsid protein vp1;
PDBTitle: sv40 vp1 pentamer in complex with gm1 oligosaccharide
72c4u62D_
not modelled 13.8 43
PDB header:viral protein
Chain: D: PDB Molecule:structural protein vp1;
PDBTitle: trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in2 complex with 3'-sialyllactose
73d1vpsa_
not modelled 13.7 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
74c2elpA_
not modelled 13.7 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
75d1tfva2
not modelled 13.6 28
Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
76c4fmiN_
not modelled 13.5 43
PDB header:viral protein
Chain: N: PDB Molecule:vp1;
PDBTitle: merkel cell polyomavirus vp1 in complex with 3'-sialyllactosamine
77c4mbyB_
not modelled 13.5 43
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein vp1;
PDBTitle: structure of b-lymphotropic polyomavirus vp1 in complex with 3'-2 sialyllactose
78c3uv1B_
not modelled 13.4 13
PDB header:allergen
Chain: B: PDB Molecule:der f 7 allergen;
PDBTitle: crystal structure a major allergen from dust mite
79c2iykB_
not modelled 13.4 30
PDB header:hydrolase
Chain: B: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
80d1y0ja1
not modelled 13.4 48
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
81d2gmga1
not modelled 13.0 41
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
82c4u3eA_
not modelled 12.9 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
83c3iysA_
not modelled 12.8 43
PDB header:virus
Chain: A: PDB Molecule:major capsid protein vp1;
PDBTitle: homology model of avian polyomavirus asymmetric unit
84c3t0yD_
not modelled 12.7 46
PDB header:transcription regulator/protein binding
Chain: D: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
85c3t0yB_
not modelled 12.5 46
PDB header:transcription regulator/protein binding
Chain: B: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
86c6egxA_
not modelled 12.5 26
PDB header:virus
Chain: A: PDB Molecule:structural protein vp1;
PDBTitle: sacbrood virus of honeybee - expansion state i
87c6flkA_
not modelled 12.5 16
PDB header:structural protein
Chain: A: PDB Molecule:cep120;
PDBTitle: crystal structure of cep120 c2c domain
88c3s7xC_
not modelled 12.4 43
PDB header:viral protein
Chain: C: PDB Molecule:major capsid protein vp1;
PDBTitle: unassembled washington university polyomavirus vp1 pentamer r198k2 mutant
89c4acqA_
not modelled 12.3 23
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
90d1pfta_
not modelled 12.2 32
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
91d1rzsa_
not modelled 12.1 58
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
92c4a17Y_
not modelled 11.8 30
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
93c3c12A_
not modelled 11.5 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
94d1dl6a_
not modelled 11.5 33
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
95c5iy9M_
not modelled 11.5 33
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
96c2xzn9_
not modelled 11.4 42
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
97d1sva1_
not modelled 11.4 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
98c3bd1B_
not modelled 11.3 50
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
99c1ze2B_
not modelled 11.3 24
PDB header:lyase/rna
Chain: B: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate

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Transmembrane helix prediction 

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