Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0623_(-)_716413_716667
DateFri Jul 26 01:50:18 BST 2019
Unique Job ID0a58b80bf1e45223
SequenceMALSIKHPEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.030 Y:34.187 Z:19.951
Model (left) based on template c4xgqD_
Top template information
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 94.3% Coverage: 35%
29 residues ( 35% of your sequence) have been modelled with 94.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgqD_



94.3 100
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2c4xgqB_



94.1 100
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
3c6a7vU_



84.6 35
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
4c4xgrH_



79.4 100
PDB header:toxin/antitoxin
Chain: H: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
5c6iyaD_



67.3 23
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
6c4xgrF_



67.0 100
PDB header:toxin/antitoxin
Chain: F: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
7c2k5jB_



63.3 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
8c6gtsC_



63.2 15
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
9c6ajnF_



56.4 17
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
10c2kelB_



51.9 40
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
11d1y9ba1



42.3 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
12c4q2uM_



42.2 18
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
13c2q2kB_



26.0 25
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
14c2q2kA_



24.9 24
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
15c2rbfB_



22.6 13
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
16d2hzaa1



18.2 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
17d2bsqe1



16.0 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
18c2xc7A_



15.9 14
PDB header:rna binding protein
Chain: A: PDB Molecule:phosphorylated adapter rna export protein;
PDBTitle: solution structure of phax-rbd in complex with ssrna
19d1myla_



15.6 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c2k9iB_



15.5 23
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
21c2h1oH_



not modelled 14.9 16
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
22d1mnta_



not modelled 14.2 13
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
23d2gg2a1



not modelled 13.3 30
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
24d1u9pa1



not modelled 12.1 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
25c5h64b_



not modelled 11.0 23
PDB header:transferase
Chain: B: PDB Molecule:regulatory-associated protein of mtor;
PDBTitle: cryo-em structure of mtorc1
26d2bj7a1



not modelled 10.8 17
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
27d1q9ja2



not modelled 10.7 16
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
28d1myka_



not modelled 10.6 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
29c3m92B_



not modelled 10.5 63
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycin;
PDBTitle: the structure of ycin, an unchracterized protein from shigella2 flexneri.
30d1bdta_



not modelled 10.4 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
31c1wkbA_



not modelled 10.4 25
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
32c4zp3M_



not modelled 10.3 19
PDB header:signaling protein
Chain: M: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
33c4zp3N_



not modelled 9.7 21
PDB header:signaling protein
Chain: N: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
34d1baza_



not modelled 9.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
35d1mylb_



not modelled 9.7 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
36c4ariA_



not modelled 9.2 63
PDB header:ligase/rna
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the2 benzoxaborole an2679 in the editing conformation
37c2xpiE_



not modelled 9.2 35
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
38c4zp3R_



not modelled 9.1 21
PDB header:signaling protein
Chain: R: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
39c4zp3Q_



not modelled 9.1 21
PDB header:signaling protein
Chain: Q: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
40c4zp3O_



not modelled 8.8 21
PDB header:signaling protein
Chain: O: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
41c5bs7F_



not modelled 8.8 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
42c4qvrA_



not modelled 8.7 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein ftt_1539c;
PDBTitle: 2.3 angstrom crystal structure of hypothetical protein ftt1539c from2 francisella tularensis.
43c5bsaF_



not modelled 8.6 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
44c2xpiB_



not modelled 8.5 35
PDB header:cell cycle
Chain: B: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
45c5h7pB_



not modelled 8.4 30
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 46;
PDBTitle: nmr structure of the vta1ntd-did2(176-204) complex
46c2hs5A_



not modelled 8.3 15
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator gntr;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1
47d1p94a_



not modelled 8.2 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
48c4fo7B_



not modelled 8.1 22
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase;
PDBTitle: pseudomonas aeruginosa metap, in mn form
49d1cuka1



not modelled 8.1 33
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
50c3um2B_



not modelled 8.0 56
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
51c3um1E_



not modelled 8.0 56
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
52c3um2E_



not modelled 8.0 56
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
53c3um0B_



not modelled 8.0 56
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
54c3sztB_



not modelled 7.9 19
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
55d2a4da1



not modelled 7.8 28
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
56c2bj3D_



not modelled 7.8 16
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
57c2k29A_



not modelled 7.6 24
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
58c1h0mD_



not modelled 7.6 16
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein trar bound2 to its autoinducer and to its target dna
59c5ydcA_



not modelled 7.4 37
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv1828;
PDBTitle: crystal structure of mercury soaked c-terminal domain of rv1828 from2 mycobacterium tuberculosis
60c4zp3P_



not modelled 7.4 19
PDB header:signaling protein
Chain: P: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
61c4egcA_



not modelled 7.3 50
PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
62c1wz2B_



not modelled 7.2 20
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
63d2hzab1



not modelled 7.2 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
64d1riqa1



not modelled 7.1 14
Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
65d1b28a_



not modelled 7.1 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
66d1o0xa_



not modelled 7.1 19
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
67c4lfuA_



not modelled 7.1 16
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
68c2ml7A_



not modelled 7.0 50
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
69c2mdvB_



not modelled 6.9 32
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
70c3hxxA_



not modelled 6.7 24
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp
71c1qu2A_



not modelled 6.6 50
PDB header:ligase/rna
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin
72c3gkuB_



not modelled 6.6 53
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
73c5ah5B_



not modelled 6.6 63
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
74c3o0lB_



not modelled 6.5 43
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
75c5ca8A_



not modelled 6.5 50
PDB header:hydrolase
Chain: A: PDB Molecule:protein sey1;
PDBTitle: structures of the yeast dynamin-like gtpase sey1p in complex with gdp
76d1bazb_



not modelled 6.5 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
77d1efva2



not modelled 6.4 28
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
78c2ca9B_



not modelled 6.3 17
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
79c4p9fA_



not modelled 6.2 35
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator mcbr;
PDBTitle: e. coli mcbr/yncc
80c3qp5C_



not modelled 6.2 16
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
81c6q8aA_



not modelled 5.9 50
PDB header:ligase
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: neisseria gonorrhoeae leucyl-trna synthetase in complex with 5'-o-(n-2 (l-leucyl)-sulfamoyl)cytidine
82c1yx3A_



not modelled 5.8 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
83c4v1af_



not modelled 5.7 16
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
84c5vgtA_



not modelled 5.5 70
PDB header:viral protein
Chain: A: PDB Molecule:gene 7 protein;
PDBTitle: x-ray structure of bacteriophage sf6 tail adaptor protein gp7
85c3tavA_



not modelled 5.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of a methionine aminopeptidase from mycobacterium2 abscessus
86d1efpa2



not modelled 5.5 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
87d1mula_



not modelled 5.5 24
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
88c2kvcA_



not modelled 5.4 16
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
89c1zvvA_



not modelled 5.3 14
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
90c2bytD_



not modelled 5.2 63
PDB header:synthetase
Chain: D: PDB Molecule:leucyl-trna synthetase;
PDBTitle: thermus thermophilus leucyl-trna synthetase complexed with2 a trnaleu transcript in the post-editing conformation
91c3iwfA_



not modelled 5.2 11
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
92c3utmC_



not modelled 5.1 29
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
93c2l8nA_



not modelled 5.1 7
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
94d1ef1c_



not modelled 5.0 17
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Moesin tail domain
Family:Moesin tail domain
95c5bsaE_



not modelled 5.0 50
PDB header:transcription regulator
Chain: E: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
96c2akfB_



not modelled 5.0 54
PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
97c2akfA_



not modelled 5.0 54
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1

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