Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0626_(-)_718028_718288
DateFri Jul 26 01:50:19 BST 2019
Unique Job ID265a59f2a7f5129a
SequenceMSEVASRELR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.990 Y:27.230 Z:36.616
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.4% Coverage: 53%
46 residues ( 53% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
79 residues ( 92%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_



99.4 17
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1



99.4 17
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_



99.2 35
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_



99.2 35
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1



98.8 15
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_



98.7 23
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1



98.6 16
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_



97.9 22
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_



97.9 22
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3dboA_



94.8 100
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
11c3k6qB_



94.3 11
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
12c1skoA_



71.5 17
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
13d3cpta1



62.2 18
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
14d2ns0a1



29.2 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
15c6c5rF_



16.0 17
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
16d1x6va1



14.8 23
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
17d1k6ma2



14.5 14
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
18d1bifa2



14.5 14
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
19c4ewvB_



11.0 29
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
20d1tipa_



10.2 14
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
21d2hq7a1



not modelled 9.9 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
22c2l2dA_



not modelled 9.1 35
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 7a;
PDBTitle: solution nmr structure of human uba-like domain of otud7a_11_83, nesg2 target ht6304a/ocsp target otud7a_11_83/sgc-toronto
23c5xtaC_



not modelled 8.7 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:virk protein;
PDBTitle: crystal structure of lpg1832, a virk family protein from legionella2 pneumophila
24d1xbra_



not modelled 8.3 27
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:T-box
25c4heoA_



not modelled 7.4 40
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
26c4a04B_



not modelled 7.2 36
PDB header:transcription
Chain: B: PDB Molecule:t-box transcription factor tbx1;
PDBTitle: structure of the dna-bound t-box domain of human tbx1, a2 transcription factor associated with the digeorge syndrome
27c3jvoA_



not modelled 7.0 0
PDB header:viral protein
Chain: A: PDB Molecule:gp6;
PDBTitle: crystal structure of bacteriophage hk97 gp6
28c2wcvI_



not modelled 6.5 17
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
29c2wtoB_



not modelled 6.5 33
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
30c2rt6A_



not modelled 6.2 17
PDB header:dna binding protein
Chain: A: PDB Molecule:primosomal replication protein n'';
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for pric n-2 terminal domain
31c2x6vB_



not modelled 6.2 45
PDB header:transcription/dna
Chain: B: PDB Molecule:t-box transcription factor tbx5;
PDBTitle: crystal structure of human tbx5 in the dna-bound and dna-2 free form
32d1ogda_



not modelled 6.0 25
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
33c5t1jB_



not modelled 5.9 36
PDB header:transcription/dna
Chain: B: PDB Molecule:t-box transcription factor tbx21;
PDBTitle: crystal structure of the tbox dna binding domain of the transcription2 factor t-bet
34c5lddA_



not modelled 5.7 20
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
35d1h6fa_



not modelled 5.7 55
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:T-box
36c5ghaF_



not modelled 5.6 17
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
37c1gk7A_



not modelled 5.3 31
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
38c2psbA_



not modelled 5.1 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yerb protein;
PDBTitle: crystal structure of yerb protein from bacillus subtilis. northeast2 structural genomics target sr586
39d2psba1



not modelled 5.1 29
Fold:YerB-like
Superfamily:YerB-like
Family:YerB-like
40d1y8xb1



not modelled 5.1 13
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)

Binding site prediction 

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