Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0627_(-)_718285_718692
DateFri Jul 26 01:50:19 BST 2019
Unique Job IDbaa41669744f0e07
SequenceVSTTPAAGVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.297 Y:37.719 Z:39.200
Model (left) based on template c3dboB_
Top template information
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 93%
126 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dboB_



100.0 94
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
2c3h87B_



99.9 23
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
3d2h1ca1



99.9 29
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c3zvkC_



99.9 19
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
5d1v96a1



99.9 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c3tndC_



99.9 27
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
7c6nklA_



99.9 25
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
8c5l6mC_



99.9 25
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
9c5sv2A_



99.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
10d1y82a1



99.9 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11c4chgC_



99.9 26
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
12c4xgrG_



99.8 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
13c6a7vG_



99.8 24
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
14c5x3tD_



99.6 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15c5wzfB_



99.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16d2fe1a1



99.5 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c2fe1A_



99.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
18c3ix7A_



98.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
19d1w8ia_



98.5 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c3i8oA_



98.3 18
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
21d1v8pa_



not modelled 98.3 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
22c1v8pK_



not modelled 98.3 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
23d1o4wa_



not modelled 98.0 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5ywwA_



not modelled 98.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c5f4hF_



not modelled 97.9 13
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2lcqA_



not modelled 97.8 17
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 96.9 17
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 93.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 92.5 20
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c2hwyB_



not modelled 90.4 14
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c3v32B_



not modelled 71.4 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
32c3v33A_



not modelled 67.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
33c4mj7B_



not modelled 66.4 15
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
34c6g5iy_



not modelled 66.0 12
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
35d1cmwa2



not modelled 63.3 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1tfra2



not modelled 49.8 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37d1xo1a2



not modelled 36.1 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38c3zddA_



not modelled 34.2 17
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
39c2qipA_



not modelled 23.2 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
40c2ihnA_



not modelled 22.9 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
41c1ut8B_



not modelled 13.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
42c1cmwA_



not modelled 12.6 27
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
43d1q0qa2



not modelled 9.0 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
44c4mitG_



not modelled 8.6 22
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
45c2mdtA_



not modelled 7.5 18
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
46c5yaaD_



not modelled 7.4 33
PDB header:hydrolase
Chain: D: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 nyn domain from mus musculus
47d2hi6a1



not modelled 6.9 19
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
48c3iefA_



not modelled 6.2 30
PDB header:transferase, rna binding protein
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna guanine-n1-methyltransferase from bartonella2 henselae using mpcs.
49c5urnB_



not modelled 5.9 23
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain 1 of p65
50c1jqsB_



not modelled 5.7 15
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
51c4g25A_



not modelled 5.7 21
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
52d1r0ka2



not modelled 5.4 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
53c5dizB_



not modelled 5.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:proteinaceous rnase p 2;
PDBTitle: crystal structure of nuclear proteinaceous rnase p 2 (prorp2) from a.2 thaliana

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