Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0631c_(recC)_725016_728309
DateFri Jul 26 01:50:19 BST 2019
Unique Job ID04b0d1383d4de2f1
SequenceMALHLHRAER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:92.589 Y:122.697 Z:83.361
Model (left) based on template c1w36F_
Top template information
PDB header:recombination
Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain;
PDBTitle: recbcd:dna complex
Confidence and coverage
Confidence:100.0% Coverage: 93%
1017 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
1072 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1w36F_



100.0 29
PDB header:recombination
Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain;
PDBTitle: recbcd:dna complex
2d1w36c2



100.0 34
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
3d1w36c1



100.0 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
4c3u44B_



100.0 12
PDB header:hydrolase/dna
Chain: B: PDB Molecule:atp-dependent helicase/deoxyribonuclease subunit b;
PDBTitle: crystal structure of addab-dna complex
5d1w36c3



100.0 22
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
6c3u4qA_



100.0 12
PDB header:hydrolase/dna
Chain: A: PDB Molecule:atp-dependent helicase/nuclease subunit a;
PDBTitle: structure of addab-dna complex at 2.8 angstroms
7c1w36E_



100.0 16
PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex
8c2is6B_



100.0 12
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
9c1uaaB_



100.0 13
PDB header:hydrolase/dna
Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.);
PDBTitle: e. coli rep helicase/dna complex
10d1uaaa2



100.0 12
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
11c4c30I_



100.0 15
PDB header:hydrolase/dna
Chain: I: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of deinococcus radiodurans uvrd in2 complex with dna, form 2
12c3lfuA_



100.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of e. coli uvrd
13d1pjra2



100.0 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
14c1pjrA_



100.0 15
PDB header:helicase
Chain: A: PDB Molecule:pcra;
PDBTitle: structure of dna helicase
15d1w36b2



100.0 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
16c2pjrF_



100.0 13
PDB header:hydrolase/dna
Chain: F: PDB Molecule:protein (helicase pcra);
PDBTitle: helicase product complex
17c1qhhB_



99.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
18c2pjrB_



99.6 27
PDB header:hydrolase/dna
Chain: B: PDB Molecule:protein (helicase pcra);
PDBTitle: helicase product complex
19c1qhhD_



99.5 27
PDB header:hydrolase
Chain: D: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
20c3dmnA_



99.2 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dna helicase;
PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1
21d1w36d2



not modelled 98.8 10
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
22d1uaaa1



not modelled 98.5 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
23d1w36b1



not modelled 98.2 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
24d1pjra1



not modelled 98.1 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
25c3upuC_



not modelled 97.8 16
PDB header:hydrolase/dna
Chain: C: PDB Molecule:atp-dependent dna helicase dda;
PDBTitle: crystal structure of the t4 phage sf1b helicase dda
26c3e1sA_



not modelled 97.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd;
PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
27c5ld2D_



not modelled 97.1 18
PDB header:hydrolase
Chain: D: PDB Molecule:recbcd enzyme subunit recd;
PDBTitle: cryo-em structure of recbcd+dna complex revealing activated nuclease2 domain
28c1w36G_



not modelled 97.1 16
PDB header:recombination
Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain;
PDBTitle: recbcd:dna complex
29c1qhhA_



not modelled 97.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
30c5o6dB_



not modelled 97.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of scpif1 in complex with polydt and atpgs
31c5n8oA_



not modelled 96.8 14
PDB header:transferase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: cryo em structure of the conjugative relaxase trai of the f/r1 plasmid2 system
32c3gp8A_



not modelled 96.5 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd, putative;
PDBTitle: crystal structure of the binary complex of recd2 with dna
33c4b3gA_



not modelled 96.3 19
PDB header:hydrolase/rna
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: crystal structure of ighmbp2 helicase in complex with rna
34c4onbA_



not modelled 96.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated exonuclease, cas4 family;
PDBTitle: crystal structure of crispr-associated exonuclease (cas4 family) from2 pyrobaculum calidifontis jcm 11548
35c5fhhA_



not modelled 95.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of human pif1 helicase domain residues 200-641
36c5eaxB_



not modelled 95.3 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna replication atp-dependent helicase/nuclease dna2;
PDBTitle: crystal structure of dna2 in complex with an ssdna
37c5wwpA_



not modelled 95.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
38c5wwpB_



not modelled 94.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
39c2gk7A_



not modelled 94.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: structural and functional insights into the human upf1 helicase core
40c5ftbA_



not modelled 93.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:tpr domain protein;
PDBTitle: crystal structure of pif1 helicase from bacteroides in2 complex with amppnp
41c4n0oC_



not modelled 91.6 27
PDB header:hydrolase/dna
Chain: C: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
42c2wjyA_



not modelled 91.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
43c5mznA_



not modelled 90.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:helicase sen1,helicase sen1;
PDBTitle: helicase sen1
44c2xzlA_



not modelled 89.1 16
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
45c3h4rA_



not modelled 87.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
46c4pj3A_



not modelled 86.9 20
PDB header:rna binding protein
Chain: A: PDB Molecule:intron-binding protein aquarius;
PDBTitle: structural insight into the function and evolution of the spliceosomal2 helicase aquarius, structure of aquarius in complex with amppnp
47c4ic1D_



not modelled 84.2 9
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of sso0001
48c3vkwA_



not modelled 71.0 22
PDB header:transferase
Chain: A: PDB Molecule:replicase large subunit;
PDBTitle: crystal structure of the superfamily 1 helicase from tomato mosaic2 virus
49c4nl8E_



not modelled 37.0 20
PDB header:dna binding protein
Chain: E: PDB Molecule:primosome assembly protein pria;
PDBTitle: pria helicase bound to ssb c-terminal tail peptide
50c4nl4H_



not modelled 25.7 20
PDB header:dna binding protein
Chain: H: PDB Molecule:primosome assembly protein pria;
PDBTitle: pria helicase bound to adp
51c6hegA_



not modelled 22.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase hrpb;
PDBTitle: crystal structure of escherichia coli deah/rha helicase hrpb
52d1w36d1



not modelled 20.9 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
53c5lopC_



not modelled 15.4 28
PDB header:rna binding protein
Chain: C: PDB Molecule:klla0a11308p;
PDBTitle: structure of the active form of /k. lactis/ dcp1-dcp2-edc3 decapping2 complex bound to m7gdp
54c2vbcA_



not modelled 12.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:dengue 4 ns3 full-length protein;
PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
55c5zyuA_



not modelled 12.3 8
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mitochondrial genome maintenance exonuclease 1;
PDBTitle: the crytal struture of humanmgme1 with single strand dna2
56c5exvD_



not modelled 12.1 35
PDB header:heme-binding protein
Chain: D: PDB Molecule:hemin-degrading hems.chux domain protein;
PDBTitle: crystal structure of heme binding protein hutx from vibrio cholerae
57c5lqwO_



not modelled 11.5 15
PDB header:splicing
Chain: O: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase-like
PDBTitle: yeast activated spliceosome
58d2h5na1



not modelled 11.5 14
Fold:TerB-like
Superfamily:TerB-like
Family:PG1108-like
59c4tpsD_



not modelled 11.3 16
PDB header:replication
Chain: D: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: sporulation inhibitor of dna replication, sira, in complex with domain2 i of dnaa
60c2l2qA_



not modelled 11.3 11
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
61c2v1xB_



not modelled 11.0 9
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase q1;
PDBTitle: crystal structure of human recq-like dna helicase
62c4q47A_



not modelled 10.9 15
PDB header:dna binding protein
Chain: A: PDB Molecule:dna helicase recq;
PDBTitle: structure of the drrecq catalytic core in complex with adp
63c4cdgA_



not modelled 10.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:bloom syndrome protein;
PDBTitle: crystal structure of the bloom's syndrome helicase blm in complex with2 nanobody
64d1zrra1



not modelled 10.6 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
65d1gm5a4



not modelled 10.4 9
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
66c5lj5Q_



not modelled 10.0 15
PDB header:splicing
Chain: Q: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase prp16;
PDBTitle: overall structure of the yeast spliceosome immediately after2 branching.
67d1oywa2



not modelled 9.1 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
68d1wnaa1



not modelled 9.1 13
Fold:TTHA1528-like
Superfamily:TTHA1528-like
Family:TTHA1528-like
69c5z58x_



not modelled 9.0 15
PDB header:splicing
Chain: X: PDB Molecule:smad nuclear-interacting protein 1;
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
70c1oywA_



not modelled 8.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase;
PDBTitle: structure of the recq catalytic core
71c4on9B_



not modelled 8.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: dech box helicase domain
72c3e2iA_



not modelled 8.7 9
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from s. aureus
73c4mgeB_



not modelled 8.6 9
PDB header:transferase
Chain: B: PDB Molecule:pts system, cellobiose-specific iib component;
PDBTitle: 1.85 angstrom resolution crystal structure of pts system cellobiose-2 specific transporter subunit iib from bacillus anthracis.
74d1vr3a1



not modelled 8.6 20
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
75c4cbmA_



not modelled 8.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease ns3;
PDBTitle: pestivirus ns3 helicase
76c4qglA_



not modelled 8.1 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:acireductone dioxygenase;
PDBTitle: acireductone dioxygenase from bacillus anthracis with three cadmium2 ions
77c1z63A_



not modelled 8.1 13
PDB header:hydrolase/dna complex
Chain: A: PDB Molecule:helicase of the snf2/rad54 family;
PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex with dsdna
78d1t1ea2



not modelled 8.0 21
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
79c5gn1D_



not modelled 8.0 23
PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent helicase fun30;
PDBTitle: crystal structure of the c-terminal part of fun30 atpase domain
80c3kx2A_



not modelled 7.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase prp43;
PDBTitle: crystal structure of prp43p in complex with adp
81c5eomF_



not modelled 7.8 11
PDB header:transferase
Chain: F: PDB Molecule:protein mab-21-like 1;
PDBTitle: structure of full-length human mab21l1 with bound ctp
82c6hwyB_



not modelled 7.8 21
PDB header:viral protein
Chain: B: PDB Molecule:putative gag polyprotein;
PDBTitle: mature mlv capsid pentamer structure in intact virus particles
83c4km5A_



not modelled 7.8 9
PDB header:transferase
Chain: A: PDB Molecule:cyclic gmp-amp synthase;
PDBTitle: x-ray crystal structure of human cyclic gmp-amp synthase (cgas)
84c3nctC_



not modelled 7.5 9
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
85c2x7mA_



not modelled 7.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
86c5n8zA_



not modelled 7.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:cg9323, isoform a;
PDBTitle: crystal structure of drosophila dhx36 helicase in complex with2 ctctccctt
87c2l25A_



not modelled 7.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: np_888769.1
88c2ja1A_



not modelled 7.2 8
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
89c4k8vA_



not modelled 7.2 12
PDB header:transferase
Chain: A: PDB Molecule:cyclic gmp-amp synthase;
PDBTitle: structure of cyclic gmp-amp synthase (cgas)
90d1xx6a1



not modelled 7.0 5
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Type II thymidine kinase
91c5xdrA_



not modelled 6.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase dhx15;
PDBTitle: crystal structure of human deah-box rna helicase dhx15 in complex with2 adp
92d1tdja3



not modelled 6.8 19
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Allosteric threonine deaminase C-terminal domain
93c2z83A_



not modelled 6.4 16
PDB header:viral protein
Chain: A: PDB Molecule:helicase/nucleoside triphosphatase;
PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8
94c3jb9X_



not modelled 6.4 17
PDB header:rna binding protein/rna
Chain: X: PDB Molecule:pre-mrna-splicing factor cwf11;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
95d1nkta4



not modelled 6.4 9
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
96c3b85A_



not modelled 6.3 3
PDB header:hydrolase
Chain: A: PDB Molecule:phosphate starvation-inducible protein;
PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum
97c3tbkA_



not modelled 6.2 7
PDB header:hydrolase
Chain: A: PDB Molecule:rig-i helicase domain;
PDBTitle: mouse rig-i atpase domain
98c1xx6B_



not modelled 6.1 6
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
99c2zxxA_



not modelled 6.0 24
PDB header:cell cycle/replication
Chain: A: PDB Molecule:geminin;
PDBTitle: crystal structure of cdt1/geminin complex

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