Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0633c_(-)_729330_730169
DateFri Jul 26 01:50:19 BST 2019
Unique Job IDdeef0e63b6502fc8
SequenceMVDSMGWVLS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.796 Y:44.412 Z:36.419
Model (left) based on template d2ccwa1
Top template information
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
Confidence and coverage
Confidence: 67.9% Coverage: 28%
78 residues ( 28% of your sequence) have been modelled with 67.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2ccwa1
67.9 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
2d1azca_
62.4 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
3c2rttA_
62.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:chic;
PDBTitle: solution structure of the chitin-binding domain of chi18ac from2 streptomyces coelicolor
4c5a1vG_
62.2 20
PDB header:transport protein
Chain: G: PDB Molecule:coatomer subunit beta';
PDBTitle: the structure of the copi coat linkage i
5d1exha_
62.1 12
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family II
6d1rkra_
60.4 10
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
7d1nkpa_
57.1 25
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
8c4dtfA_
51.5 36
PDB header:toxin
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: structure of a vgrg vibrio cholerae toxin acd domain in complex with2 amp-pnp and mg++
9c2kutA_
51.2 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a
10c2ql2D_
51.0 13
PDB header:transcription/dna
Chain: D: PDB Molecule:neurogenic differentiation factor 1;
PDBTitle: crystal structure of the basic-helix-loop-helix domains of2 the heterodimer e47/neurod1 bound to dna
11d1nlwa_
48.5 16
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
12c3ay2A_
45.9 16
PDB header:antitumor protein, antiviral protein
Chain: A: PDB Molecule:lipid modified azurin protein;
PDBTitle: crystal structure of neisserial azurin
13c1l9mB_
42.8 14
PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
14c2kl6A_
42.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a
15c3uekA_
41.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: crystal structure of the catalytic domain of rat poly (adp-ribose)2 glycohydrolase
16c2ypaA_
39.5 19
PDB header:immune system
Chain: A: PDB Molecule:t-cell acute lymphocytic leukemia protein 1;
PDBTitle: structure of the scl:e47:lmo2:ldb1 complex bound to dna
17d1cuoa_
38.5 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
18d1joia_
37.8 12
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
19c2l0dA_
37.7 11
PDB header:cell adhesion
Chain: A: PDB Molecule:cell surface protein;
PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a
20c6f7eA_
37.6 10
PDB header:carbohydrate
Chain: A: PDB Molecule:putative secreted cellulose binding protein;
PDBTitle: nmr solution structure of the cellulose-binding family 2 carbohydrate2 binding domain (cbm2) from sclpmo9c
21d1tzoa_
not modelled 34.9 21
Fold:Anthrax protective antigen
Superfamily:Anthrax protective antigen
Family:Anthrax protective antigen
22c3ndyG_
not modelled 33.1 12
PDB header:hydrolase
Chain: G: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
23d1w8oa1
not modelled 32.6 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
24d1jzga_
not modelled 31.7 9
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
25c2ypbB_
not modelled 31.5 8
PDB header:immune system
Chain: B: PDB Molecule:transcription factor e2-alpha;
PDBTitle: structure of the scl:e47 complex bound to dna
26c5epwB_
not modelled 31.3 23
PDB header:viral protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: c-terminal domain of human coronavirus nl63 nucleocapsid protein
27d1cc3a_
not modelled 29.9 7
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
28c2h47C_
not modelled 28.9 15
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:azurin;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
29d1jatb_
not modelled 28.2 6
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
30c5fj8C_
not modelled 28.1 30
PDB header:transcription
Chain: C: PDB Molecule:dna-directed rna polymerases i and iii subunit rpac1;
PDBTitle: cryo-em structure of yeast rna polymerase iii elongation complex at 3.2 9 a
31d2cjra1
not modelled 25.4 15
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
32c3u5vA_
not modelled 24.9 6
PDB header:transcription
Chain: A: PDB Molecule:protein max, transcription factor e2-alpha chimera;
PDBTitle: crystal structure of max-e47
33d1ef1c_
not modelled 24.0 31
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Moesin tail domain
Family:Moesin tail domain
34d2ge7a1
not modelled 23.3 17
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
35d1bdya_
not modelled 22.3 14
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
36d2giba1
not modelled 22.3 15
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
37c2lbwA_
not modelled 21.6 11
PDB header:rna binding protein
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2;
PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant
38d1c4ka3
not modelled 21.1 30
Fold:Ornithine decarboxylase C-terminal domain
Superfamily:Ornithine decarboxylase C-terminal domain
Family:Ornithine decarboxylase C-terminal domain
39d1etha1
not modelled 20.3 12
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
40c2enjA_
not modelled 20.1 15
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c theta type;
PDBTitle: solution sturcture of the c2 domain from human protein2 kinase c theta
41d1mdya_
not modelled 20.1 19
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
42d2ca1a1
not modelled 20.0 17
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
43c4atkB_
not modelled 18.9 13
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:microphthalmia-associated transcription factor;
PDBTitle: mitf:e-box complex
44d1g5aa1
not modelled 18.9 17
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
45c4ayaA_
not modelled 18.6 15
PDB header:cell cycle
Chain: A: PDB Molecule:dna-binding protein inhibitor id-2;
PDBTitle: crystal structure of id2 hlh homodimer at 2.1a resolution
46d1hloa_
not modelled 18.1 13
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
47c1ywkE_
not modelled 17.5 29
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
48d1nlwe_
not modelled 17.2 14
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
49c2lfhA_
not modelled 16.7 16
PDB header:dna binding protein inhibitor
Chain: A: PDB Molecule:dna-binding protein inhibitor id-3;
PDBTitle: solution nmr structure of the helix-loop-helix domain of human id32 protein, northeast structural genomics consortium target hr3111a
50c1yueA_
not modelled 15.0 17
PDB header:viral protein
Chain: A: PDB Molecule:head vertex protein gp24;
PDBTitle: bacteriophage t4 capsid vertex protein gp24
51c3kf6B_
not modelled 14.8 29
PDB header:structural protein
Chain: B: PDB Molecule:protein ten1;
PDBTitle: crystal structure of s. pombe stn1-ten1 complex
52c1s1iG_
not modelled 14.4 16
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
53d1gpla1
not modelled 14.3 15
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
54d2hjja1
not modelled 14.1 29
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YkfF-like
55c2hjjA_
not modelled 14.1 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ykff;
PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397.
56c6hn9A_
not modelled 14.0 47
PDB header:antimicrobial protein
Chain: A: PDB Molecule:nicomicin-1;
PDBTitle: nicomicin-1 -- novel antimicrobial peptides from the arctic polychaeta2 nicomache minor provide new molecular insight into biological role of3 the brichos domain
57d1nwpa_
not modelled 13.0 9
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
58d2bwqa1
not modelled 12.8 14
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
59c2x7lP_
not modelled 12.8 45
PDB header:immune system
Chain: P: PDB Molecule:protein rev;
PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a resolution for2 multimeric binding to the rev response element
60c5bu3A_
not modelled 12.7 46
PDB header:lyase
Chain: A: PDB Molecule:pyri4;
PDBTitle: crystal structure of diels-alderase pyri4 in complex with its product
61d1si2a_
not modelled 12.2 29
Fold:SH3-like barrel
Superfamily:PAZ domain
Family:PAZ domain
62c2aanA_
not modelled 12.0 14
PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
63d1st6a3
not modelled 11.9 17
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
64d1an2a_
not modelled 11.9 14
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
65c2h2yA_
not modelled 11.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme;
PDBTitle: crystal structure of ubiquitin conjugating enzyme e2 from2 plasmodium falciparum
66c6b4hB_
not modelled 11.7 36
PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin amo1;
PDBTitle: crystal structure of chaetomium thermophilum gle1 ctd-nup42 gbm-ip62 complex
67c2x3bB_
not modelled 11.7 10
PDB header:hydrolase
Chain: B: PDB Molecule:toxic extracellular endopeptidase;
PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase
68c5dfkA_
not modelled 11.5 22
PDB header:structural protein
Chain: A: PDB Molecule:probable fimbrial chaperone ecpb;
PDBTitle: crystal structure of the escherichia coli common pilus chaperone, ecpb
69c6g1lA_
not modelled 11.2 13
PDB header:transcription
Chain: A: PDB Molecule:microphthalmia-associated transcription factor;
PDBTitle: mitf/clearbox structure
70d1wmda1
not modelled 11.0 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Proprotein convertase P-domain
71d1e42a1
not modelled 10.8 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Alpha-adaptin ear subdomain-like
72d1twfc2
not modelled 10.6 33
Fold:Insert subdomain of RNA polymerase alpha subunit
Superfamily:Insert subdomain of RNA polymerase alpha subunit
Family:Insert subdomain of RNA polymerase alpha subunit
73d2aifa1
not modelled 10.4 16
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
74c5vwlA_
not modelled 10.3 26
PDB header:viral protein
Chain: A: PDB Molecule:cytoplasmic tail of hiv-1 gp41 protein;
PDBTitle: solution nmr structure of the membrane associated segment of hiv-12 gp41 cytoplasmic tail
75c2m1aA_
not modelled 10.3 46
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 rev arginine-rich motif (arm);
PDBTitle: hiv-1 rev arm peptide (residues t34-r50)
76d1uuja_
not modelled 10.0 30
Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
77c1etgB_
not modelled 10.0 46
PDB header:viral protein/rna
Chain: B: PDB Molecule:rev peptide;
PDBTitle: rev response element (rre) rna complexed with rev peptide,2 nmr, 19 structures
78c1etfB_
not modelled 10.0 46
PDB header:viral protein/rna
Chain: B: PDB Molecule:rev peptide;
PDBTitle: rev response element (rre) rna complexed with rev peptide,2 nmr, minimized average structure
79d2ozba1
not modelled 9.8 20
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
80d1xbia1
not modelled 9.7 10
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
81d2vzsa2
not modelled 9.5 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
82d1u2ca2
not modelled 9.4 40
Fold:Dystroglycan, domain 2
Superfamily:Dystroglycan, domain 2
Family:Dystroglycan, domain 2
83d2czwa1
not modelled 9.3 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
84c4ympC_
not modelled 9.0 14
PDB header:heme-binding protein
Chain: C: PDB Molecule:internalin;
PDBTitle: crystal structure of the bacillus anthracis hal neat domain in complex2 with heme
85c2p7vA_
not modelled 9.0 42
PDB header:transcription
Chain: A: PDB Molecule:regulator of sigma d;
PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4
86d1nkpb_
not modelled 8.8 14
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
87c2x3lA_
not modelled 8.8 21
PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
88c2q2eB_
not modelled 8.8 13
PDB header:isomerase
Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b;
PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei
89c5hdwA_
not modelled 8.7 16
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 3;
PDBTitle: apag domain of fbxo3
90c3os7D_
not modelled 8.7 25
PDB header:isomerase
Chain: D: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution
91c3os7B_
not modelled 8.7 25
PDB header:isomerase
Chain: B: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution
92c4h10B_
not modelled 8.7 20
PDB header:transcription/dna
Chain: B: PDB Molecule:circadian locomoter output cycles protein kaput;
PDBTitle: intermolecular recognition revealed by the complex structure of human2 clock-bmal1 basic helix-loop-helix domains with e-box dna
93d1an4a_
not modelled 8.7 9
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
94d2alea1
not modelled 8.6 18
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
95c4fc2C_
not modelled 8.4 19
PDB header:hydrolase
Chain: C: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: crystal structure of mouse poly(adp-ribose) glycohydrolase (parg)2 catalytic domain
96c4v193_
not modelled 8.4 25
PDB header:ribosome
Chain: 3: PDB Molecule:mitoribosomal protein ul30m, mrpl30;
PDB Fragment:cca-3' end; PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
97c5udtD_
not modelled 8.3 18
PDB header:transferase
Chain: D: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with amp
98c5gnjI_
not modelled 8.3 20
PDB header:dna binding protein/dna
Chain: I: PDB Molecule:transcription factor myc2;
PDBTitle: structure of a transcription factor and dna complex
99d1v27a_
not modelled 8.2 14
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)

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Transmembrane helix prediction 

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