Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0634A_(-)_731116_731367
DateFri Jul 26 01:50:19 BST 2019
Unique Job ID2f9c5d572d2998ad
SequenceLGSDCGCGGY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.379 Y:23.241 Z:25.882
Model (left) based on template c6a7vU_
Top template information
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
Confidence and coverage
Confidence: 97.7% Coverage: 42%
35 residues ( 42% of your sequence) have been modelled with 97.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6a7vU_
97.7 46
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
2c2vdwA_
63.1 29
PDB header:transferase
Chain: A: PDB Molecule:vaccinia virus capping enzyme d1 subunit;
PDBTitle: guanosine n7 methyl-transferase sub-complex (d1-d12) of the2 vaccinia virus mrna capping enzyme
3c6q56C_
30.6 29
PDB header:rna binding protein
Chain: C: PDB Molecule:trna (adenine(22)-n(1))-methyltransferase;
PDBTitle: crystal structure of the b. subtilis m1a22 trna methyltransferase trmk
4c2mxdA_
25.2 64
PDB header:viral protein
Chain: A: PDB Molecule:viral protein genome-linked;
PDBTitle: solution structure of vpg of porcine sapovirus
5c2m4hA_
24.8 58
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
6c3fuxB_
24.0 21
PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121
7d2hzaa1
18.7 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
8d2f8la1
18.3 26
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
9c4ponB_
17.0 17
PDB header:transferase
Chain: B: PDB Molecule:putative rna methylase;
PDBTitle: the crystal structure of a putative sam-dependent methyltransferase,2 ytqb, from bacillus subtilis
10d1o54a_
16.9 23
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
11c1dl5A_
16.7 26
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
12c3g07C_
15.6 22
PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein 3 homolog2 (drosophila)
13c5oy4Y_
15.2 36
PDB header:transferase
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: gsk3beta complex with n-(6-(3,4-dihydroxyphenyl)-1h-pyrazolo[3,4-2 b]pyridin-3-yl)acetamide
14c3zrkX_
14.5 36
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
15c3zrlX_
14.3 36
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
16c3zrmX_
14.3 36
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-2 3beta inhibitors
17c1gngX_
13.9 36
PDB header:transferase
Chain: X: PDB Molecule:frattide;
PDBTitle: glycogen synthase kinase-3 beta (gsk3) complex with frattide2 peptide
18c3zrkY_
13.4 36
PDB header:transferase/peptide
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
19c3zrlY_
13.3 36
PDB header:transferase/peptide
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
20c3zrmY_
13.3 36
PDB header:transferase/peptide
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-2 3beta inhibitors
21c1gngY_
not modelled 13.2 36
PDB header:transferase
Chain: Y: PDB Molecule:frattide;
PDBTitle: glycogen synthase kinase-3 beta (gsk3) complex with frattide2 peptide
22c4afjY_
not modelled 13.2 36
PDB header:transferase/peptide
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: 5-aryl-4-carboxamide-1,3-oxazoles: potent and selective gsk-32 inhibitors
23c4ckcD_
not modelled 13.1 31
PDB header:transferase/hydrolase
Chain: D: PDB Molecule:mrna-capping enzyme catalytic subunit;
PDBTitle: vaccinia virus capping enzyme complexed with sah (monoclinic form)
24c3ckkA_
not modelled 13.1 29
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1
25c5oy4X_
not modelled 13.0 36
PDB header:transferase
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: gsk3beta complex with n-(6-(3,4-dihydroxyphenyl)-1h-pyrazolo[3,4-2 b]pyridin-3-yl)acetamide
26c2fk8A_
not modelled 12.5 12
PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
27c2kz3A_
not modelled 12.4 34
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
28c4afjX_
not modelled 12.1 36
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: 5-aryl-4-carboxamide-1,3-oxazoles: potent and selective gsk-32 inhibitors
29d1qama_
not modelled 11.4 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
30c1x37A_
not modelled 11.4 37
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: structure of bacillus subtilis lon protease ssd domain
31c3bgvC_
not modelled 10.2 35
PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
32d1d2ha_
not modelled 10.1 13
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
33c6ifsB_
not modelled 9.8 23
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: ksga from bacillus subtilis 168
34d2fcaa1
not modelled 9.5 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
35d1knza_
not modelled 9.3 35
Fold:NSP3 homodimer
Superfamily:NSP3 homodimer
Family:NSP3 homodimer
36c2h1rA_
not modelled 8.3 29
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum
37d1m6ya2
not modelled 8.1 22
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
38c1xrxD_
not modelled 7.7 67
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
39d1xrxa1
not modelled 7.7 67
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
40d2nn6h3
not modelled 7.6 38
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
41c1m6yA_
not modelled 7.6 22
PDB header:transferase
Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw;
PDBTitle: crystal structure analysis of tm0872, a putative sam-dependent2 methyltransferase, complexed with sah
42c3uzuA_
not modelled 7.5 30
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
43c3grrA_
not modelled 7.5 23
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of the complex between s-adenosyl homocysteine and2 methanocaldococcus jannaschi dim1.
44c3fydA_
not modelled 7.5 23
PDB header:transferase
Chain: A: PDB Molecule:probable dimethyladenosine transferase;
PDBTitle: crystal structure of dim1 from the thermophilic archeon,2 methanocaldococcus jannaschi
45c2kxwB_
not modelled 7.3 44
PDB header:calcium-binding protein/metal transport
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2
46c2m5eB_
not modelled 7.3 44
PDB header:calcium-binding protein/metal transport
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: structure of the c-domain of calcium-saturated calmodulin bound to the2 iq motif of nav1.2
47c4jxjA_
not modelled 7.2 29
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: crystal structure of ribosomal rna small subunit methyltransferase a2 from rickettsia bellii determined by iodide sad phasing
48c4aoyD_
not modelled 7.2 28
PDB header:oxidoreductase
Chain: D: PDB Molecule:isocitrate dehydrogenase [nadp];
PDBTitle: open ctidh. the complex structures of isocitrate dehydrogenase from2 clostridium thermocellum and desulfotalea psychrophila, support a new3 active site locking mechanism
49c6butB_
not modelled 6.9 45
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: solution structure of full-length apo mammalian calmodulin bound to2 the iq motif of the human voltage-gated sodium channel nav1.2
50d2ieaa3
not modelled 6.9 19
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
51c3mznA_
not modelled 6.9 27
PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043
52c1q5vB_
not modelled 6.8 36
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
53d2ahme1
not modelled 6.8 20
Fold:Coronavirus NSP8-like
Superfamily:Coronavirus NSP8-like
Family:Coronavirus NSP8-like
54d2fk8a1
not modelled 6.5 15
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
55c3vjzB_
not modelled 6.5 21
PDB header:gene regulation
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the dna mimic protein dmp19
56c2pbfA_
not modelled 6.3 21
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate
PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine
57c1mjeB_
not modelled 6.2 46
PDB header:gene regulation/antitumor protein/dna
Chain: B: PDB Molecule:deleted in split hand/split foot protein 1;
PDBTitle: structure of a brca2-dss1-ssdna complex
58c2ahmG_
not modelled 6.2 20
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
59c4gitA_
not modelled 6.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
60d1yzha1
not modelled 6.2 15
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
61c4dckA_
not modelled 6.2 36
PDB header:transport protein/signaling protein
Chain: A: PDB Molecule:sodium channel protein type 5 subunit alpha;
PDBTitle: crystal structure of the c-terminus of voltage-gated sodium channel in2 complex with fgf13 and cam
62c4rwzA_
not modelled 6.1 19
PDB header:transferase
Chain: A: PDB Molecule:putative rrna methyltransferase;
PDBTitle: crystal structure of the antibiotic-resistance methyltransferase kmr
63c2p7iB_
not modelled 6.1 13
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sam dependent methyl-transferase type 12 family2 protein (eca1738) from pectobacterium atrosepticum scri1043 at 1.74 a3 resolution
64c5gjqY_
not modelled 6.1 54
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
65d2ifta1
not modelled 6.0 18
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
66c3g5tA_
not modelled 5.9 12
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase from yeast
67c3p2kA_
not modelled 5.8 11
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
68c5do0A_
not modelled 5.8 24
PDB header:transferase
Chain: A: PDB Molecule:protein lysine methyltransferase 1;
PDBTitle: the structure of pkmt1 from rickettsia prowazekii
69c2w6hG_
not modelled 5.7 37
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 4a.
70c2ozvA_
not modelled 5.7 15
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
71c1yb2A_
not modelled 5.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
72d1yb2a1
not modelled 5.7 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
73c3d2lC_
not modelled 5.6 11
PDB header:transferase
Chain: C: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (zp_00538691.1)2 from exiguobacterium sp. 255-15 at 1.90 a resolution
74c3sm3A_
not modelled 5.6 17
PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferases;
PDBTitle: crystal structure of sam-dependent methyltransferases q8puk2_metma2 from methanosarcina mazei. northeast structural genomics consortium3 target mar262.
75c6djyD_
not modelled 5.5 25
PDB header:virus
Chain: D: PDB Molecule:turret protein;
PDBTitle: fako virus
76c6daeC_
not modelled 5.5 40
PDB header:calcium binding protein/membrane protein
Chain: C: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 2.0 angstrom crystal structure of the d95v ca/cam:cav1.2 iq domain2 complex
77d1qyra_
not modelled 5.5 23
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
78c2ns5A_
not modelled 5.4 55
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization
79c2m4gA_
not modelled 5.3 86
PDB header:viral protein
Chain: A: PDB Molecule:murine norovirus vpg protein;
PDBTitle: solution structure of the core domain (11-85) of the murine norovirus2 vpg protein
80c2bj3D_
not modelled 5.3 19
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
81c3gdhC_
not modelled 5.2 29
PDB header:transferase
Chain: C: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine synthase 1 (tgs1)2 bound to m7gtp and adenosyl-homocysteine (active form)
82c3fmtF_
not modelled 5.2 67
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
83c4fsxB_
not modelled 5.1 19
PDB header:transferase
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of se-substituted zea mays zmet2 in complex with sah
84c2be6F_
not modelled 5.1 40
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit;
PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex

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