Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0634B_(rpmG)_731715_731882
DateFri Jul 26 01:50:20 BST 2019
Unique Job ID0e2f19390b9fabe4
SequenceMASSTDVRPK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.048 Y:46.870 Z:19.119
Model (left) based on template c3bbo3_
Top template information
PDB header:ribosome
Chain: 3: PDB Molecule:ribosomal protein l33;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
Confidence and coverage
Confidence: 99.9% Coverage:100%
55 residues (100% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bbo3_



99.9 55
PDB header:ribosome
Chain: 3: PDB Molecule:ribosomal protein l33;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
2c5o60c_



99.9 90
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
3c6hma1_



99.9 57
PDB header:ribosome
Chain: 1: PDB Molecule:50s ribosomal protein l33;
PDBTitle: improved model derived from cryo-em map of staphylococcus aureus large2 ribosomal subunit
4c3d5d6_



99.8 57
PDB header:ribosome
Chain: 6: PDB Molecule:50s ribosomal protein l33;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of the second 70s ribosome. the entire3 crystal structure contains two 70s ribosomes as described in remark4 400.
5d2gyc11



99.6 37
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L33p
6d2zjr11



99.6 36
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L33p
7c2b9n6_



99.5 36
PDB header:ribosome
Chain: 6: PDB Molecule:50s ribosomal protein l33;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf2,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400.
8c5xym1_



99.2 45
PDB header:ribosome
Chain: 1: PDB Molecule:50s ribosomal protein l33 2;
PDBTitle: large subunit of mycobacterium smegmatis
9c2ftcP_



99.2 21
PDB header:ribosome
Chain: P: PDB Molecule:mitochondrial ribosomal protein l33 isoform a;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
10c1vw4X_



98.6 11
PDB header:ribosome
Chain: X: PDB Molecule:54s ribosomal protein l39, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
11c3j21j_



95.9 38
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l14p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
12d1vqo31



95.7 38
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L44e
13c4a19C_



95.5 31
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l36a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
14c2zkr4_



95.5 50
PDB header:ribosomal protein/rna
Chain: 4: PDB Molecule:60s ribosomal protein l44e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
15c3zf7t_



91.1 31
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
16d2cona1



83.1 31
Fold:Rubredoxin-like
Superfamily:NOB1 zinc finger-like
Family:NOB1 zinc finger-like
17c6g5iy_



67.4 28
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
18c2lcqA_



51.7 32
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
19c4c2mQ_



31.5 15
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase i subunit rpa135;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
20c2vl6C_



30.3 25
PDB header:dna binding protein
Chain: C: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain
21c4pogC_



not modelled 26.6 26
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
22c5us3A_



not modelled 26.1 50
PDB header:de novo protein
Chain: A: PDB Molecule:heterogeneous-backbone variant of the sp1-3 zinc finger: n-
PDBTitle: heterogeneous-backbone foldamer mimic of the sp1-3 zinc finger
23d2fy9a1



not modelled 24.8 42
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
24c6o3pA_



not modelled 24.8 50
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
25c3f9vA_



not modelled 22.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase
26d2cu8a1



not modelled 21.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
27c1k82D_



not modelled 21.2 35
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
28c3w0fA_



not modelled 21.0 75
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
29c2e72A_



not modelled 20.8 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pogo transposable element with znf domain;
PDBTitle: solution structure of the zinc finger domain of human2 kiaa0461
30d2gmga1



not modelled 20.1 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
31c1nnjA_



not modelled 19.3 31
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
32c2hr5B_



not modelled 19.2 43
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
33c2f5qA_



not modelled 19.0 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
34c6g4wr_



not modelled 15.4 29
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
35d1twfi2



not modelled 15.4 29
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
36d1z8ga2



not modelled 15.2 23
Fold:SRCR-like
Superfamily:SRCR-like
Family:Hepsin, N-terminal domain
37c1yuzB_



not modelled 14.8 52
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
38d1r2za3



not modelled 14.6 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
39d1qf8a_



not modelled 14.6 31
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
40c2gb5B_



not modelled 13.3 29
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
41d1l1ta3



not modelled 13.3 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
42d1k82a3



not modelled 13.2 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
43d2ey4e1



not modelled 13.1 36
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
44d1tdza3



not modelled 13.1 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
45d2apob1



not modelled 12.9 45
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
46c5cm2M_



not modelled 12.8 43
PDB header:transferase
Chain: M: PDB Molecule:trna methyltransferase activator subunit;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
47c2kdxA_



not modelled 12.7 24
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
48c2vgaA_



not modelled 12.7 45
PDB header:viral protein
Chain: A: PDB Molecule:protein a41;
PDBTitle: the structure of vaccinia virus a41
49c3twkB_



not modelled 12.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
50d1jwhc_



not modelled 12.5 31
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
51d1imla1



not modelled 12.4 42
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
52c2j6aA_



not modelled 12.3 36
PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
53c5fuvB_



not modelled 12.0 15
PDB header:transferase
Chain: B: PDB Molecule:thymdine kinase;
PDBTitle: catalytic domain of thymidine kinase from trypanosoma2 brucei with dthd
54c4i7hA_



not modelled 11.9 16
PDB header:transcription
Chain: A: PDB Molecule:peroxide stress sensing regulator;
PDBTitle: structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
55d1yfba1



not modelled 11.7 40
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
56c1ee8A_



not modelled 11.5 27
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
57c2e9hA_



not modelled 10.8 27
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5
58d1ee8a3



not modelled 10.7 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
59c3h93A_



not modelled 10.5 21
PDB header:transcription regulator
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba
60c6qg3P_



not modelled 10.4 17
PDB header:translation
Chain: P: PDB Molecule:eukaryotic translation initiation factor 2 subunit beta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model b)
61d1ltla_



not modelled 10.3 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA replication initiator (cdc21/cdc54) N-terminal domain
62c2mkdA_



not modelled 10.3 50
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger protein 346;
PDBTitle: human jaz zf3 residues 168-227
63c3a46B_



not modelled 10.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of mvnei1/thf complex
64c2xigA_



not modelled 9.9 14
PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites
65c3feuA_



not modelled 9.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri
66c2qq0B_



not modelled 9.5 15
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp
67c3zf7o_



not modelled 9.3 46
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
68c2kvfA_



not modelled 9.3 44
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
69c4c2mX_



not modelled 9.2 50
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
70c2orvB_



not modelled 9.0 21
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: human thymidine kinase 1 in complex with tp4a
71c5xcoB_



not modelled 8.9 29
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:ace-arg-arg-arg-arg-cys-pro-leu-tyr-ile-ser-tyr-asp-pro-
PDBTitle: crystal structure of human k-ras g12d mutant in complex with gdp and2 cyclic inhibitory peptide
72d1lv3a_



not modelled 8.8 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Hypothetical zinc finger protein YacG
73c5y06A_



not modelled 8.8 40
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis
74c2zkrz_



not modelled 8.7 38
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
75c3cc4Z_



not modelled 8.6 46
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
76c4iloA_



not modelled 8.6 43
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
77c3heyA_



not modelled 8.4 38
PDB header:de novo protein
Chain: A: PDB Molecule:alpha/beta-peptide based on the gcn4-pli side chain
PDBTitle: cyclic residues in alpha/beta-peptide helix bundles: gcn4-pli side2 chain sequence on an (alpha-alpha-beta) backbone with cyclic beta-3 residues at positions 1, 4, 10, 19 and 28
78d1x6ea2



not modelled 8.4 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
79c1cl4A_



not modelled 8.4 50
PDB header:viral protein
Chain: A: PDB Molecule:protein (gag polyprotein);
PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
80c2j87D_



not modelled 8.4 18
PDB header:transferase
Chain: D: PDB Molecule:thymidine kinase;
PDBTitle: structure of vaccinia virus thymidine kinase in complex2 with dttp: insights for drug design
81c3dvwA_



not modelled 8.3 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis
82d1ctla1



not modelled 8.1 42
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
83d1vqoz1



not modelled 8.0 46
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
84c3j39p_



not modelled 8.0 38
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
85d2cota1



not modelled 7.9 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
86c2avuF_



not modelled 7.9 28
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
87d2avue1



not modelled 7.9 28
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
88d1jj2y_



not modelled 7.8 38
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
89c3j21i_



not modelled 7.8 38
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
90c2qkdA_



not modelled 7.8 23
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
91c4b6ap_



not modelled 7.7 38
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
92c2qa4Z_



not modelled 7.7 46
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
93d1zr9a1



not modelled 7.5 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
94c1zr9A_



not modelled 7.5 25
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 593;
PDBTitle: solution structure of a human c2h2-type zinc finger protein
95d2k4xa1



not modelled 7.5 50
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
96c2opfA_



not modelled 7.4 28
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
97c2znmA_



not modelled 7.4 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis
98c6bo0A_



not modelled 7.4 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:mdba protein;
PDBTitle: mdba protein, a thiol-disulfide oxidoreductase from corynebacterium2 matruchotii
99c5ionA_



not modelled 7.3 31
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 13

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