Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0638_(secE)_733740_734225
DateFri Jul 26 01:50:20 BST 2019
Unique Job IDf79453f90e8f182f
SequenceVSDEGDVADE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.681 Y:50.125 Z:56.361
Model (left) based on template c5ch4E_
Top template information
PDB header:protein transport
Chain: E: PDB Molecule:protein translocase subunit sece;
PDBTitle: peptide-bound state of thermus thermophilus secyeg
Confidence and coverage
Confidence: 99.8% Coverage: 36%
58 residues ( 36% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 64% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ch4E_
99.8 26
PDB header:protein transport
Chain: E: PDB Molecule:protein translocase subunit sece;
PDBTitle: peptide-bound state of thermus thermophilus secyeg
2c5eulE_
99.8 49
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: structure of the seca-secy complex with a translocating polypeptide2 substrate
3c2akhZ_
99.8 32
PDB header:protein transport
Chain: Z: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: normal mode-based flexible fitted coordinates of a non-translocating2 secyeg protein-conducting channel into the cryo-em map of a secyeg-3 nascent chain-70s ribosome complex from e. coli
4c3dinD_
99.7 35
PDB header:membrane protein, protein transport
Chain: D: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
5c2zjsE_
99.0 28
PDB header:protein transport/immune system
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment
6c2zqpE_
98.9 27
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus2 thermophilus
7c3dl8D_
97.9 21
PDB header:protein transport
Chain: D: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
8c3dl8C_
97.9 21
PDB header:protein transport
Chain: C: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
9d1rhzb_
94.9 9
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
10c2wwbB_
93.7 14
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
11c2ww9B_
92.1 9
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sss1;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
12d1rh5b_
80.1 8
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
13c4cdiC_
75.8 17
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
14d1wh8a_
62.8 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:CUT domain
15c1zrtD_
60.8 12
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
16c3mp7B_
57.9 13
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes
17c2fynH_
57.6 14
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
18c1p84D_
52.9 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
19c3cwbQ_
47.7 19
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
20c2yiuE_
45.7 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
21c1qcrD_
not modelled 39.4 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
22c2kogA_
not modelled 32.5 18
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
23c2eqzA_
not modelled 24.2 17
PDB header:transcription
Chain: A: PDB Molecule:high mobility group protein b3;
PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3
24c3qf4B_
not modelled 22.3 15
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
25d2e74b1
not modelled 21.4 19
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
26c4h1wB_
not modelled 20.9 24
PDB header:hydrolase/hydrolase regulator
Chain: B: PDB Molecule:sarcolipin;
PDBTitle: e1 structure of the (sr) ca2+-atpase in complex with sarcolipin
27c3w5aC_
not modelled 20.9 24
PDB header:metal transport/membrane protein
Chain: C: PDB Molecule:sarcolipin;
PDBTitle: crystal structure of the calcium pump and sarcolipin from rabbit fast2 twitch skeletal muscle in the e1.mg2+ state
28c6fs4A_
not modelled 20.0 31
PDB header:antimicrobial protein
Chain: A: PDB Molecule:alpha-s2-casein;
PDBTitle: nmr structure of casocidin-ii antimicrobial peptide in 60% tfe
29d2h8pc1
not modelled 19.6 15
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
30c3hd7A_
not modelled 19.5 8
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
31d1v54d_
not modelled 19.0 19
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
32c1jdmA_
not modelled 17.4 24
PDB header:membrane protein
Chain: A: PDB Molecule:sarcolipin;
PDBTitle: nmr structure of sarcolipin
33c4gn0D_
not modelled 17.3 13
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
34d2axth1
not modelled 16.7 20
Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
35c2axtH_
not modelled 16.7 20
PDB header:electron transport
Chain: H: PDB Molecule:photosystem ii reaction center h protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
36c5gasN_
not modelled 16.3 18
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
37c2wg7B_
not modelled 16.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative phospholipase a2;
PDBTitle: structure of oryza sativa (rice) pla2
38c2wwbC_
not modelled 16.0 25
PDB header:ribosome
Chain: C: PDB Molecule:protein transport protein sec61 subunit beta;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
39c2ehbD_
not modelled 15.9 18
PDB header:signalling protein/transferase
Chain: D: PDB Molecule:cbl-interacting serine/threonine-protein kinase 24;
PDBTitle: the structure of the c-terminal domain of the protein kinase atsos22 bound to the calcium sensor atsos3
40d1j3xa_
not modelled 15.8 14
Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
41c1j3xA_
not modelled 15.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:high mobility group protein 2;
PDBTitle: solution structure of the n-terminal domain of the hmgb2
42c2co9A_
not modelled 15.5 16
PDB header:transcription
Chain: A: PDB Molecule:thymus high mobility group box protein tox;
PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse
43c6gy4B_
not modelled 15.4 18
PDB header:rna binding protein
Chain: B: PDB Molecule:protein bicaudal c homolog 1;
PDBTitle: crystal structure of the n-terminal kh domain of human bicc1
44c3fwbB_
not modelled 15.3 17
PDB header:cell cycle, transcription
Chain: B: PDB Molecule:nuclear mrna export protein sac3;
PDBTitle: sac3:sus1:cdc31 complex
45c4il3B_
not modelled 14.9 8
PDB header:hydrolase
Chain: B: PDB Molecule:ste24p;
PDBTitle: crystal structure of s. mikatae ste24p
46c2e6oA_
not modelled 14.8 13
PDB header:transcription, cell cycle
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1
47d1wh6a_
not modelled 14.2 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:CUT domain
48c2y69Q_
not modelled 13.6 19
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
49c6o7ua_
not modelled 13.6 10
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
50c4hd1A_
not modelled 13.2 13
PDB header:transferase
Chain: A: PDB Molecule:squalene synthase hpnc;
PDBTitle: crystal structure of squalene synthase hpnc from alicyclobacillus2 acidocaldarius
51c2ndjA_
not modelled 13.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
52c2m0qA_
not modelled 11.7 16
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
53c1yq3C_
not modelled 11.5 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:succinate dehydrogenase cytochrome b, large subunit;
PDBTitle: avian respiratory complex ii with oxaloacetate and ubiquinone
54c2m3aA_
not modelled 9.9 22
PDB header:dna binding protein
Chain: A: PDB Molecule:protein knl-2;
PDBTitle: nmr solution structure of a myb-like dna binding domain of knl-2 from2 c. elegans
55d2ezwa1
not modelled 9.5 32
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
56c2n28A_
not modelled 9.0 18
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
57c2gofA_
not modelled 8.7 18
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
58c2gohA_
not modelled 8.7 18
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
59c1pi8A_
not modelled 8.7 18
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
60c1pjeA_
not modelled 8.7 18
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1
61c1pi7A_
not modelled 8.7 18
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
62d1q90d_
not modelled 8.6 26
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
63c2wmhA_
not modelled 8.4 11
PDB header:hydrolase
Chain: A: PDB Molecule:fucolectin-related protein;
PDBTitle: crystal structure of the catalytic module of a family 982 glycoside hydrolase from streptococcus pneumoniae tigr4 in3 complex with the h-disaccharide blood group antigen.
64c2m59B_
not modelled 8.4 12
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
65c2m59A_
not modelled 8.4 12
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
66c6m97A_
not modelled 8.3 7
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
67d2axti1
not modelled 7.9 24
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
68c3a0hi_
not modelled 7.9 24
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
69c4f9kA_
not modelled 7.8 14
PDB header:transferase regulator
Chain: A: PDB Molecule:camp-dependent protein kinase type i-beta regulatory
PDBTitle: crystal structure of human camp-dependent protein kinase type i-beta2 regulatory subunit (fragment 11-73), northeast structural genomics3 consortium (nesg) target hr8613a
70c3ipdB_
not modelled 7.7 9
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
71c2ly4A_
not modelled 7.5 19
PDB header:nuclear protein/antitumour protein
Chain: A: PDB Molecule:high mobility group protein b1;
PDBTitle: hmgb1-facilitated p53 dna binding occurs via hmg-box/p532 transactivation domain interaction and is regulated by the acidic3 tail
72c2wmkB_
not modelled 7.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:fucolectin-related protein;
PDBTitle: crystal structure of the catalytic module of a family 982 glycoside hydrolase from streptococcus pneumoniae sp3-bs713 (sp3gh98) in complex with the a-lewisy pentasaccharide4 blood group antigen.
73c4mrnB_
not modelled 7.4 17
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter related protein;
PDBTitle: structure of a bacterial atm1-family abc transporter
74c6fs5A_
not modelled 7.2 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:alpha-s2-casein;
PDBTitle: nmr structure of casocidin-i antimicrobial peptide in 60% tfe
75c2k21A_
not modelled 7.1 29
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
76c3jcuI_
not modelled 6.8 18
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
77c4y21A_
not modelled 6.7 16
PDB header:exocytosis
Chain: A: PDB Molecule:protein unc-13 homolog a;
PDBTitle: crystal structure of munc13-1 mun domain
78c6nd1D_
not modelled 6.6 21
PDB header:protein transport
Chain: D: PDB Molecule:protein transport protein sbh1;
PDBTitle: cryoem structure of the sec complex from yeast
79d1x2la1
not modelled 6.5 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:CUT domain
80c2mfrA_
not modelled 6.5 22
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
81c5mx2T_
not modelled 6.4 13
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
82c4aw6B_
not modelled 6.4 6
PDB header:hydrolase
Chain: B: PDB Molecule:caax prenyl protease 1 homolog;
PDBTitle: crystal structure of the human nuclear membrane zinc metalloprotease2 zmpste24 (face1)
83c5b66T_
not modelled 5.9 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
84c5b5et_
not modelled 5.9 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
85c4il6T_
not modelled 5.9 13
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of sr-substituted photosystem ii
86c5b5eT_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
87c3wu2t_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
88c4ub6t_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
89c5kaft_
not modelled 5.8 13
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
90c4ub6T_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
91c4ub8t_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
92c3wu2T_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
93c5kaiT_
not modelled 5.8 13
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
94c5gtht_
not modelled 5.8 13
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
95c5v2cT_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: re-refinement of crystal structure of photosystem ii complex
96c5zznT_
not modelled 5.8 13
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus
97c4ub8T_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
98c5b66t_
not modelled 5.8 13
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
99c5zznt_
not modelled 5.8 13
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below