Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0641_(rplA)_735520_736227
DateFri Jul 26 01:50:20 BST 2019
Unique Job IDb5c422c917b894d8
SequenceMSKTSKAYRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.924 Y:42.777 Z:51.666
Model (left) based on template c3qoyA_
Top template information
PDB header:ribosomal protein
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus
Confidence and coverage
Confidence:100.0% Coverage: 97%
229 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qoyA_
100.0 51
PDB header:ribosomal protein
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus
2c3bboD_
100.0 46
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein l1;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
3d1ad2a_
100.0 49
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
4c2gyc2_
100.0 49
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l1;
PDBTitle: structure of the 50s subunit of a secm-stalled e. coli ribosome2 complex obtained by fitting atomic models for rna and protein3 components into cryo-em map emd-1143
5c5dm70_
100.0 57
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of the 50s ribosomal subunit from deinococcus2 radiodurans in complex with hygromycin a
6d1mzpa_
100.0 27
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
7d1dwua_
100.0 30
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
8c3j21A_
100.0 31
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
9d1i2aa_
100.0 28
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
10c2zkr5_
100.0 28
PDB header:ribosomal protein/rna
Chain: 5: PDB Molecule:60s ribosomal protein l10a;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
11c3j39z_
100.0 22
PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein l27;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
12c1s1iA_
100.0 21
PDB header:ribosome
Chain: A: PDB Molecule:60s ribosomal protein l1;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
13c3zf7J_
100.0 17
PDB header:ribosome
Chain: J: PDB Molecule:ribosomal protein;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
14c3iz5A_
100.0 20
PDB header:ribosome
Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
15c2ftcA_
100.0 21
PDB header:ribosome
Chain: A: PDB Molecule:mitochondrial ribosomal protein l1;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
16d2j01c1
100.0 47
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
17c6em3K_
100.0 12
PDB header:ribosome
Chain: K: PDB Molecule:proteasome-interacting protein cic1;
PDBTitle: state a architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
18c2ov7C_
100.0 56
PDB header:ribosomal protein
Chain: C: PDB Molecule:50s ribosomal protein l1;
PDBTitle: the first domain of the ribosomal protein l1 from thermus thermophilus
19c5yduA_
100.0 15
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome biogenesis protein utp30;
PDBTitle: crystal structure of utp30
20c5jpqk_
100.0 15
PDB header:ribosome
Chain: K: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
21c4k0qC_
not modelled 100.0 30
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
22c4k0mC_
not modelled 100.0 30
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
23c3j3v5_
not modelled 100.0 51
PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l1;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
24c4wweA_
not modelled 99.9 51
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of bactobolin a bound to 70s ribosome-trna complex
25c4wwtA_
not modelled 99.9 53
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of bactobolin a bound to 70s ribosome-trna complex
26d1piia1
not modelled 62.1 36
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
27c2kzhA_
not modelled 61.4 33
PDB header:isomerase
Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf;
PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli
28c4wuiA_
not modelled 56.7 33
PDB header:isomerase
Chain: A: PDB Molecule:n-(5'-phosphoribosyl)anthranilate isomerase;
PDBTitle: crystal structure of trpf from jonesia denitrificans
29d1v5xa_
not modelled 50.1 29
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
30c4e1jA_
not modelled 48.4 10
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase in complex with glycerol from2 sinorhizobium meliloti 1021
31c1piiA_
not modelled 47.6 35
PDB header:bifunctional(isomerase and synthase)
Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase;
PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase: indoleglycerolphosphate3 synthase from escherichia coli refined at 2.0 angstroms resolution
32c5vm1A_
not modelled 46.4 17
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of a xyloylose kinase from brucella ovis
33c3g25B_
not modelled 45.0 15
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
34d1nsja_
not modelled 41.8 35
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
35c2d4wA_
not modelled 41.7 8
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
36c3flcX_
not modelled 41.4 8
PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
37c1xupO_
not modelled 41.3 8
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
38c2dpnB_
not modelled 41.2 19
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
39d2i4ra1
not modelled 40.5 16
Fold:AtpF-like
Superfamily:AtpF-like
Family:AtpF-like
40c2zf5O_
not modelled 39.2 12
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
41c2w40C_
not modelled 38.3 16
PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
42c3ifrB_
not modelled 37.1 23
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
43c3hz6A_
not modelled 32.9 15
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
44d2p3ra1
not modelled 30.9 19
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
45c4aajA_
not modelled 28.9 22
PDB header:isomerase
Chain: A: PDB Molecule:n-(5'-phosphoribosyl)anthranilate isomerase;
PDBTitle: structure of n-(5'-phosphoribosyl)anthranilate isomerase from2 pyrococcus furiosus
46c5lhfA_
not modelled 28.3 17
PDB header:isomerase
Chain: A: PDB Molecule:n-(5'-phosphoribosyl)anthranilate isomerase;
PDBTitle: phosphoribosyl anthranilate isomerase from thermococcus kodakaraensis
47c5tuuB_
not modelled 28.3 24
PDB header:transcription
Chain: B: PDB Molecule:transcription factor e2f4;
PDBTitle: crystal structure of the e2f4-dp1 coiled coil and marked-box domains
48c1glbG_
not modelled 28.2 19
PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
49c3nbmA_
not modelled 27.1 14
PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
50c2nlxA_
not modelled 25.3 11
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
51c2nqqA_
not modelled 25.1 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
52c2vhmI_
not modelled 24.9 16
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l11;
PDBTitle: structure of pdf binding helix in complex with the ribosome2 (part 1 of 4)
53c5o60J_
not modelled 24.8 15
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l11;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
54c3ezwD_
not modelled 24.4 19
PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
55c3gbtA_
not modelled 21.3 20
PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
56d1r59o1
not modelled 21.0 8
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
57c4mgeB_
not modelled 20.3 13
PDB header:transferase
Chain: B: PDB Molecule:pts system, cellobiose-specific iib component;
PDBTitle: 1.85 angstrom resolution crystal structure of pts system cellobiose-2 specific transporter subunit iib from bacillus anthracis.
58c3cjqB_
not modelled 20.0 19
PDB header:transferase/ribosomal protein
Chain: B: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 in space group p212121
59c2ov6A_
not modelled 19.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase subunit f;
PDBTitle: the nmr structure of subunit f of the methanogenic a1ao atp synthase2 and its interaction with the nucleotide-binding subunit b
60d2azeb1
not modelled 18.6 30
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:E2F dimerization segment
61c5ya2A_
not modelled 18.2 7
PDB header:structural protein
Chain: A: PDB Molecule:autoinducer-2 kinase;
PDBTitle: crystal structure of lsrk-hpr complex with adp
62c5mq9A_
not modelled 16.2 14
PDB header:translation
Chain: A: PDB Molecule:uncharacterized protein yacp;
PDBTitle: crystal structure of rae1 (yacp) from bacillus subtilis (w164l mutant)
63d1qapa1
not modelled 15.7 31
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
64c3gg4B_
not modelled 15.6 9
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
65d1o4ua1
not modelled 13.7 39
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
66d1iiba_
not modelled 12.9 15
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
67d1qk1a2
not modelled 12.2 9
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
68c3wxiB_
not modelled 12.0 10
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of trypanosoma brucei gambiense glycerol kinase2 (ligand-free form)
69c3bboK_
not modelled 11.6 19
PDB header:ribosome
Chain: K: PDB Molecule:ribosomal protein l11;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
70c2ftcG_
not modelled 11.3 32
PDB header:ribosome
Chain: G: PDB Molecule:39s ribosomal protein l11, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
71c2mdtA_
not modelled 11.1 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
72c4n40A_
not modelled 11.0 19
PDB header:cell cycle
Chain: A: PDB Molecule:protein ect2;
PDBTitle: crystal structure of human epithelial cell-transforming sequence 22 protein
73c3jvpA_
not modelled 10.9 20
PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
74c4walA_
not modelled 10.4 56
PDB header:protein binding/rna
Chain: A: PDB Molecule:branchpoint-bridging protein;
PDBTitle: crystal structure of selenomethionine msl5 protein in complex with rna2 at 2.2 a
75c5tuvB_
not modelled 10.3 33
PDB header:transcription
Chain: B: PDB Molecule:transcription factor e2f5;
PDBTitle: crystal structure of the e2f5-dp1-p107 ternary complex
76c1jqmA_
not modelled 9.8 19
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l11;
PDBTitle: fitting of l11 protein and elongation factor g (ef-g) in2 the cryo-em map of e. coli 70s ribosome bound with ef-g,3 gdp and fusidic acid
77c5anbD_
not modelled 9.5 29
PDB header:translation
Chain: D: PDB Molecule:60s ribosomal protein l12;
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
78d1k1ga_
not modelled 8.7 27
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
79c2lvsA_
not modelled 8.4 15
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr solution structure of a crispr repeat binding protein
80c2l2qA_
not modelled 8.0 16
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
81c4jvhA_
not modelled 7.8 67
PDB header:rna binding protein
Chain: A: PDB Molecule:protein quaking;
PDBTitle: structure of the star domain of quaking protein in complex with rna
82d1qpoa1
not modelled 7.8 15
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
83c3ho6B_
not modelled 7.6 10
PDB header:toxin
Chain: B: PDB Molecule:toxin a;
PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a
84c5te9A_
not modelled 7.4 14
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a response regulator receiver protein from2 burkholderia phymatum
85c4lp7C_
not modelled 7.3 22
PDB header:calcium binding protein
Chain: C: PDB Molecule:matrix protein m;
PDBTitle: crystal structure of the human metapneumovirus matrix protein
86c4w8fA_
not modelled 7.2 15
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain lysozyme chimera;
PDBTitle: crystal structure of the dynein motor domain in the amppnp-bound state
87d2nqra3
not modelled 7.0 19
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
88c5colB_
not modelled 6.9 17
PDB header:translation
Chain: B: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 from methanococcus jannaschii
89d3cjsb1
not modelled 6.8 25
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
90c3iz5J_
not modelled 6.8 26
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l12 (l11p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
91c5w78B_
not modelled 6.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: human acyloxyacyl hydrolase (aoah), proteolytically processed
92d2d00a1
not modelled 6.7 16
Fold:AtpF-like
Superfamily:AtpF-like
Family:AtpF-like
93c3cjtP_
not modelled 6.7 25
PDB header:transferase/ribosomal protein
Chain: P: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11
94d2gycg2
not modelled 6.6 25
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
95c5z2hA_
not modelled 6.5 16
PDB header:membrane protein
Chain: A: PDB Molecule:dictyostelium discoideum mitochondrial calcium uniporter;
PDBTitle: structure of dictyostelium discoideum mitochondrial calcium uniporter2 n-terminal domain(ddmcu-ntd)
96c5el3D_
not modelled 6.4 28
PDB header:rna binding protein
Chain: D: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: structure of the kh domain of t-star
97d1xbpg2
not modelled 6.3 25
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
98c4lzlA_
not modelled 6.2 8
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the inactive form of the regulatory domain from the2 repressor of iron transport regulator (ritr)
99d1mmsa2
not modelled 6.2 25
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain

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