Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0651_(rplJ)_748279_748815
DateFri Jul 26 01:50:21 BST 2019
Unique Job IDab3f35d1bc41361d
SequenceMARADKATAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.391 Y:58.475 Z:78.314
Model (left) based on template d1zava1
Top template information
Fold:Ferredoxin-like
Superfamily:Ribosomal protein L10-like
Family:Ribosomal protein L10-like
Confidence and coverage
Confidence:100.0% Coverage: 95%
169 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1zava1



100.0 38
Fold:Ferredoxin-like
Superfamily:Ribosomal protein L10-like
Family:Ribosomal protein L10-like
2c3uosH_



100.0 34
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l10;
PDBTitle: crystal structure of release factor rf3 trapped in the gtp state on a2 rotated conformation of the ribosome (without viomycin)
3c5mmiI_



100.0 26
PDB header:ribosome
Chain: I: PDB Molecule:plastid ribosomal protein ul10c;
PDBTitle: structure of the large subunit of the chloroplast ribosome
4c5o60I_



100.0 83
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
5c3i8iY_



100.0 32
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l10;
PDBTitle: elongation complex of the 70s ribosome with three trnas and mrna. this2 entry 3i8i contains 50s ribosomal subnit. the 30s ribosomal subunit3 can be found in pdb entry 3i8h. molecule a in the same asymmetric4 unit is deposited as 3i8f (50s) and 3i8g (30s).
6c4v19J_



100.0 21
PDB header:ribosome
Chain: J: PDB Molecule:mitoribosomal protein ul10m, mrpl10;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
7c3a1yG_



99.9 21
PDB header:ribosomal protein
Chain: G: PDB Molecule:acidic ribosomal protein p0;
PDBTitle: the structure of archaeal ribosomal stalk p1/p0 complex
8c4byuq_



99.9 19
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18-a;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
9c2qa4G_



99.8 20
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homo;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
10c3jyw8_



99.8 20
PDB header:ribosome
Chain: 8: PDB Molecule:60s ribosomal protein lp0;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
11c3u5iq_



99.8 21
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
12c4b6aq_



99.8 21
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18-b;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
13c3jsyA_



99.8 22
PDB header:ribosomal protein
Chain: A: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: n-terminal fragment of ribosomal protein l10 from methanococcus2 jannaschii
14c3j3bq_



99.8 17
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
15c3iz5s_



99.8 24
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
16c3izcs_



99.8 21
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
17c4hubG_



99.8 22
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the re-refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution: more complete structure3 of the l7/l12 and l1 stalk, l5 and lx proteins
18c3j21k_



99.7 23
PDB header:ribosome
Chain: K: PDB Molecule:50s ribosomal protein l14e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
19c3j65n_



99.7 16
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l28;
PDBTitle: arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
20c4nwbA_



99.7 15
PDB header:unknown function
Chain: A: PDB Molecule:mrna turnover protein 4;
PDBTitle: crystal structure of mrt4
21c5ancC_



not modelled 99.6 17
PDB header:translation
Chain: C: PDB Molecule:60s acidic ribosomal protein p0;
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
22c6humN_



not modelled 41.2 27
PDB header:proton transport
Chain: N: PDB Molecule:nad(p)h-quinone oxidoreductase subunit n;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
23c3rhtB_



not modelled 32.7 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
24c4jqsC_



not modelled 20.0 11
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative thua-like protein (bacuni_01602) from2 bacteroides uniformis atcc 8492 at 2.30 a resolution
25d1a9xb2



not modelled 19.7 18
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
26c1keeH_



not modelled 17.4 21
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
27c4h3zA_



not modelled 17.4 15
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-2 methyltransferase from burkholderia phymatum bound to s-adenosyl3 homocystein in both half-sites
28d1luza_



not modelled 17.0 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
29c5uazB_



not modelled 16.3 16
PDB header:protein transport
Chain: B: PDB Molecule:nucleoporin nup53;
PDBTitle: crystal structure of the yeast nucleoporin
30c5e8bB_



not modelled 15.9 31
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase-associated protein rtf1;
PDBTitle: crystal structure of the s. cerevisiae rtf1 histone modification2 domain mutant r126a
31c3brcA_



not modelled 15.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein of unknown function;
PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum
32c2lndA_



not modelled 14.8 20
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein, pfk fold;
PDBTitle: solution nmr structure of de novo designed protein, pfk fold,2 northeast structural genomics consortium target or134
33c4qkoA_



not modelled 14.6 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pyocin-s2 immunity protein;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
34c5wylB_



not modelled 13.2 13
PDB header:ribosomal protein/nuclear protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
35c5wylD_



not modelled 13.1 13
PDB header:ribosomal protein/nuclear protein
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
36c5emxA_



not modelled 12.5 31
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase-associated protein rtf1;
PDBTitle: crystal structure of the s. cerevisiae rtf1 histone modification2 domain mutant r124a r126a r128a
37c3j7jA_



not modelled 12.4 9
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
38c3j7kA_



not modelled 12.4 9
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
39c3j8cA_



not modelled 12.4 9
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
40c3j8bA_



not modelled 12.4 9
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
41c3m20A_



not modelled 11.5 16
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
42c5d5pC_



not modelled 11.4 10
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
43c2qv6D_



not modelled 11.1 17
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase iii;
PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions
44d1jo0a_



not modelled 10.9 18
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
45d1gyxa_



not modelled 10.6 26
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
46c3d5dJ_



not modelled 10.5 58
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l10;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of the second 70s ribosome. the entire3 crystal structure contains two 70s ribosomes as described in remark4 400.
47c3d5bJ_



not modelled 10.5 58
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l10;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
48d2gk3a1



not modelled 10.3 8
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
49c5oiyC_



not modelled 9.9 41
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
50c5oixE_



not modelled 9.9 41
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
51c5oiyG_



not modelled 9.9 41
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
52c5oiyE_



not modelled 9.9 41
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
53c5oixA_



not modelled 9.9 41
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
54c4bxtD_



not modelled 9.9 41
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
55c5oixF_



not modelled 9.9 41
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
56c5oixB_



not modelled 9.7 41
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
57c4bxtE_



not modelled 9.7 41
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
58c4bxtF_



not modelled 9.7 41
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
59c4bxtB_



not modelled 9.7 41
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
60c5oiyH_



not modelled 9.7 41
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
61c5oixC_



not modelled 9.6 41
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
62c5oiyB_



not modelled 9.6 41
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
63c4bxtG_



not modelled 9.6 41
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
64c5oiyA_



not modelled 9.6 41
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
65c5oixG_



not modelled 9.6 41
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
66c4bxtH_



not modelled 9.5 41
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
67c3mrzI_



not modelled 9.5 58
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3mrz contains 50s ribosomal subunit. the 30s ribosomal subunit can be3 found in pdb entry 3ms0. molecule a in the same asymmetric unit is4 deposited as 3mr8 (50s) and 3ms1 (30s).
68c3ms1I_



not modelled 9.5 58
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3ms1 contains 50s ribosomal subunit. the 30s ribosomal subunit can be3 found in pdb entry 3mr8. molecule b in the same asymmetric unit is4 deposited as 3mrz (50s) and 3ms0 (30s).
69c5oiyF_



not modelled 9.4 41
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
70c3oepA_



not modelled 9.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
71c5oixH_



not modelled 9.3 41
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
72c5oiyD_



not modelled 9.3 41
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
73c4bxtA_



not modelled 9.3 41
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
74c5oixD_



not modelled 9.3 41
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
75d1iioa_



not modelled 9.1 19
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
76c4bxtC_



not modelled 9.1 41
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
77c6fj3A_



not modelled 8.5 23
PDB header:membrane protein
Chain: A: PDB Molecule:parathyroid hormone/parathyroid hormone-related peptide
PDBTitle: high resolution crystal structure of parathyroid hormone 1 receptor in2 complex with a peptide agonist.
78d2qkwa1



not modelled 8.1 29
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Avirulence protein AvrPto
Family:Avirulence protein AvrPto
79c2qkwA_



not modelled 8.1 29
PDB header:transferase
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto
80c1e0tD_



not modelled 8.0 11
PDB header:phosphotransferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: r292d mutant of e. coli pyruvate kinase
81d1yc5a1



not modelled 8.0 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
82c2p3wB_



not modelled 8.0 16
PDB header:protein binding
Chain: B: PDB Molecule:probable serine protease htra3;
PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)
83c2m4mA_



not modelled 7.9 16
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the rrm domain of the hypothetical protein2 cagl0m09691g from candida glabrata
84c4hylB_



not modelled 7.7 12
PDB header:transcription regulator
Chain: B: PDB Molecule:stage ii sporulation protein;
PDBTitle: the crystal structure of an anti-sigma-factor antagonist from2 haliangium ochraceum dsm 14365
85c4jj0B_



not modelled 7.7 16
PDB header:electron transport
Chain: B: PDB Molecule:mamp;
PDBTitle: crystal structure of mamp
86c5mquA_



not modelled 7.5 16
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: crystal structure of bovine enterovirus 2 determined with serial2 femtosecond x-ray crystallography
87c3ku7B_



not modelled 7.4 11
PDB header:cell cycle
Chain: B: PDB Molecule:cell division topological specificity factor;
PDBTitle: crystal structure of helicobacter pylori mine, a cell division2 topological specificity factor
88c3j9tQ_



not modelled 7.3 15
PDB header:hydrolase
Chain: Q: PDB Molecule:v-type proton atpase subunit d;
PDBTitle: yeast v-atpase state 1
89c6emvA_



not modelled 7.0 9
PDB header:rna binding protein
Chain: A: PDB Molecule:trna (guanine(9)-/adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of dual specific trm10 construct from thermococcus2 kodakaraensis.
90d1ni5a1



not modelled 6.8 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PP-loop ATPase
91d1rq8a_



not modelled 6.4 11
Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
92c3oirA_



not modelled 6.3 16
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein;
PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes
93c5vymB_



not modelled 6.2 11
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase bgab;
PDBTitle: crystal structure of beta-galactosidase from bifidobacterium2 adolescentis
94d1jjga_



not modelled 6.2 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
95c3ccjG_



not modelled 6.1 45
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u
96c1s72G_



not modelled 6.1 45
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution
97c3cmaG_



not modelled 6.1 45
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the structure of cca and cca-phe-cap-bio bound to the large ribosomal2 subunit of haloarcula marismortui
98c1w2bG_



not modelled 6.1 45
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: trigger factor ribosome binding domain in complex with 50s
99c3g6eG_



not modelled 6.1 45
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of homoharringtonine bound to the large ribosomal2 subunit

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