Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0654_(-)_750003_751508
DateFri Jul 26 01:50:22 BST 2019
Unique Job IDe710a3cebb44cd79
SequenceMTTAQAAESQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.135 Y:64.326 Z:53.748
Model (left) based on template c3npeA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
Confidence and coverage
Confidence:100.0% Coverage: 90%
449 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3npeA_
100.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
2c5v2dA_
100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:dioxygenase;
PDBTitle: crystal structure of pseudomonas brassicacearum lignostilbene2 dioxygenase
3c5u90A_
100.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase 1;
PDBTitle: crystal structure of co-cao1 in complex with resveratrol
4c5j54A_
100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
5c2biwC_
100.0 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
6c3fsnA_
100.0 24
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
7c1nnoA_
72.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite reductase2 from pseudomonas aeruginosa
8c1gq1B_
70.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase;
PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised form
9c4cvcA_
64.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of quinone-dependent alcohol dehydrogenase from2 pseudogluconobacter saccharoketogenenes with zinc in the active site
10c6rteB_
48.5 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: dihydro-heme d1 dehydrogenase nirn in complex with dhe
11c6damA_
40.5 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:lanthanide-dependent methanol dehydrogenase xoxf;
PDBTitle: crystal structure of lanthanide-dependent methanol dehydrogenase xoxf2 from methylomicrobium buryatense 5g
12d1mdah_
36.6 24
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
13c3qc2A_
35.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bacova_03624) from2 bacteroides ovatus at 2.30 a resolution
14c5c2mA_
32.7 25
PDB header:structural protein
Chain: A: PDB Molecule:predicted protein;
PDBTitle: the de novo evolutionary emergence of a symmetrical protein is shaped2 by folding constraints
15c6cmkB_
22.6 13
PDB header:metal binding protein
Chain: B: PDB Molecule:aztd protein;
PDBTitle: crystal structure of citrobacter koseri aztd
16c3metB_
22.3 10
PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
17d1nira2
22.0 19
Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
18c1hzhK_
21.6 17
PDB header:immune system
Chain: K: PDB Molecule:immunoglobulin heavy chain;
PDBTitle: crystal structure of the intact human igg b12 with broad and potent2 activity against primary hiv-1 isolates: a template for hiv vaccine3 design
19c2j57J_
20.7 14
PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin.
20d1jmxb_
19.5 21
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
21c3mbrX_
not modelled 19.2 11
PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris
22c5i5iA_
not modelled 18.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrous-oxide reductase;
PDBTitle: shewanella denitrificans nitrous oxide reductase, app form
23c1yiqA_
not modelled 18.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.
24c1kb0A_
not modelled 17.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
25c1n7dA_
not modelled 17.6 16
PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
26d1zaka2
not modelled 16.6 33
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
27d1k91a_
not modelled 14.2 31
Fold:P-domain of calnexin/calreticulin
Superfamily:P-domain of calnexin/calreticulin
Family:P-domain of calnexin/calreticulin
28d1uvqb1
not modelled 12.8 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29d1m7ja2
not modelled 12.6 26
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:D-aminoacylase
30d1mspa_
not modelled 12.2 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
31c5v1dA_
not modelled 11.6 11
PDB header:transferase/substrate
Chain: A: PDB Molecule:eif2ak3 protein;
PDBTitle: complex structure of the bovine perk luminal domain and its substrate2 peptide
32c4iiqC_
not modelled 11.5 19
PDB header:immune system
Chain: C: PDB Molecule:beta-2-microglobulin, mhc class i-related protein;
PDBTitle: crystal structure of a human mait tcr in complex with bovine mr1
33c5aycA_
not modelled 11.2 24
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of ruminococcus albus 4-o-beta-d-mannosyl-d-glucose2 phosphorylase (ramp1) in complexes with sulfate and 4-o-beta-d-3 mannosyl-d-glucose
34d1es0a1
not modelled 10.6 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
35c5f30B_
not modelled 10.6 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiocyanate dehydrogenase;
PDBTitle: thiocyanate dehydrogenase from thioalkalivibrio paradoxus
36d1kb0a2
not modelled 10.6 13
Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
37d1bf2a1
not modelled 10.6 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
38c3elqA_
not modelled 10.5 13
PDB header:transferase
Chain: A: PDB Molecule:arylsulfate sulfotransferase;
PDBTitle: crystal structure of a bacterial arylsulfate2 sulfotransferase
39c4ozuA_
not modelled 10.1 10
PDB header:structural protein
Chain: A: PDB Molecule:coronin;
PDBTitle: crystal structure of wd40 domain from toxoplasma gondii coronin
40d2oz4a1
not modelled 8.9 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
41d2hu7a1
not modelled 8.6 19
Fold:7-bladed beta-propeller
Superfamily:Peptidase/esterase 'gauge' domain
Family:Acylamino-acid-releasing enzyme, N-terminal donain
42c3pqyB_
not modelled 8.5 20
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
43c5c2wD_
not modelled 8.5 5
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydrazine synthase alpha subunit;
PDBTitle: kuenenia stuttgartiensis hydrazine synthase pressurized with 20 bar2 xenon
44c3watA_
not modelled 8.3 18
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp2 complexed with man+glc
45d2q3za4
not modelled 8.3 21
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
46d1c16a1
not modelled 7.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
47c2vb6A_
not modelled 7.8 29
PDB header:motor protein
Chain: A: PDB Molecule:myosin vi;
PDBTitle: myosin vi (md-insert2-cam, delta insert1) post-rigor state (2 crystal form 2)
48c3ov6A_
not modelled 7.7 19
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin, t-cell surface glycoprotein cd1c, t-
PDBTitle: cd1c in complex with mpm (mannosyl-beta1-phosphomycoketide)
49c1qniE_
not modelled 7.7 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from pseudomonas nautica,2 at 2.4a resolution
50d1qnia2
not modelled 7.5 12
Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
51d1qo3a1
not modelled 7.4 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
52c2dzjA_
not modelled 7.3 31
PDB header:sugar binding protein
Chain: A: PDB Molecule:synaptic glycoprotein sc2;
PDBTitle: 2dzj/solution structure of the n-terminal ubiquitin-like2 domain in human synaptic glycoprotein sc2
53c2jroA_
not modelled 7.3 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75
54d2g50a1
not modelled 7.2 27
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
55c2k8qA_
not modelled 7.1 7
PDB header:structural protein
Chain: A: PDB Molecule:protein shq1;
PDBTitle: nmr structure of shq1p n-terminal domain
56d1liua1
not modelled 7.0 25
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
57d1vjja4
not modelled 7.0 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
58d1iaka1
not modelled 7.0 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
59d1w1ha_
not modelled 6.9 21
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
60c3pohA_
not modelled 6.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1;
PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution
61c5sv7D_
not modelled 6.8 4
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 2-alpha kinase 3;
PDBTitle: the crystal structure of a chaperone
62d1flga_
not modelled 6.7 13
Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
63d1muja1
not modelled 6.7 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
64c1l9mB_
not modelled 6.6 17
PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
65d1xv2a_
not modelled 6.6 26
Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:Alpha-acetolactate decarboxylase-like
66d1hdmb1
not modelled 6.5 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
67c4ozkA_
not modelled 6.4 25
PDB header:toxin
Chain: A: PDB Molecule:putative bacteriocin;
PDBTitle: crystal structure of laterosporulin, a broad spectrum leaderless2 bacteriocin produced by brevibacillus laterosporus strain gi-9
68d1fp5a2
not modelled 6.4 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
69c4wndB_
not modelled 6.3 11
PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:ferm and pdz domain-containing protein 4;
PDBTitle: crystal structure of the tpr domain of lgn in complex with2 frmpd4/preso1 at 1.5 angstrom resolution
70d1uowa_
not modelled 6.3 19
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
71c4wneB_
not modelled 6.3 13
PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:peptide from ferm and pdz domain-containing protein 4;
PDBTitle: crystal structure of the tpr domain of lgn in complex with2 frmpd4/preso1 at 2.0 angstrom resolution
72c3pqyG_
not modelled 6.3 20
PDB header:immune system
Chain: G: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
73c2qrsA_
not modelled 6.3 18
PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen k-b alpha chain,
PDBTitle: crystal structure of a single chain trimer composed of the mhc i heavy2 chain h-2kb y84a, beta-2microglobulin, and ovalbumin-derived peptide.
74c3q54A_
not modelled 6.2 11
PDB header:lipid binding protein
Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfgl;
PDBTitle: crystal structure of escherichia coli bamb
75c2bkiA_
not modelled 6.2 29
PDB header:motor protein/metal-binding protein
Chain: A: PDB Molecule:unconventional myosin;
PDBTitle: myosin vi nucleotide-free (mdinsert2-iq) crystal structure
76c2bc4C_
not modelled 6.2 11
PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm alpha chain;
PDBTitle: crystal structure of hla-dm
77d1dqva2
not modelled 6.1 13
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
78c3eudE_
not modelled 6.1 7
PDB header:nuclear protein
Chain: E: PDB Molecule:protein shq1;
PDBTitle: structure of the cs domain of the essential h/aca rnp assembly protein2 shq1p
79c3e7hA_
not modelled 6.0 32
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: the crystal structure of the beta subunit of the dna-directed rna2 polymerase from vibrio cholerae o1 biovar eltor
80d1vgka1
not modelled 6.0 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
81c2hyiJ_
not modelled 5.9 19
PDB header:hydrolase/rna binding protein/rna
Chain: J: PDB Molecule:protein casc3;
PDBTitle: structure of the human exon junction complex with a trapped2 dead-box helicase bound to rna
82d1dl5a2
not modelled 5.9 38
Fold:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
Superfamily:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
Family:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
83c2hlwA_
not modelled 5.8 10
PDB header:ligase, signaling protein
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 1;
PDBTitle: solution structure of the human ubiquitin-conjugating2 enzyme variant uev1a
84d1pkma1
not modelled 5.8 28
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
85c2ypdB_
not modelled 5.8 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable jmjc domain-containing histone demethylation prot
PDBTitle: crystal structure of the jumonji domain of human jumonji domain2 containing 1c protein
86c2kyyA_
not modelled 5.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:possible atp-dependent dna helicase recg-related protein;
PDBTitle: solution nmr structure of the n-terminal domain of putative atp-2 dependent dna helicase recg-related protein from nitrosomonas3 europaea, northeast structural genomics consortium target ner70a
87c5j8tA_
not modelled 5.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:choline binding protein;
PDBTitle: nmr structure of excalibur domain of cbpl
88c4mh1A_
not modelled 5.7 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:sorbose dehydrogenase;
PDBTitle: crystal structure and functional studies of quinoprotein l-sorbose2 dehydrogenase from ketogulonicigenium vulgare y25
89d1mdca_
not modelled 5.7 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
90c3ex7I_
not modelled 5.7 19
PDB header:hydrolase/rna binding protein/rna
Chain: I: PDB Molecule:protein casc3;
PDBTitle: the crystal structure of ejc in its transition state
91c4gioA_
not modelled 5.6 29
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of campylobacter jejuni cj0090
92c2l92A_
not modelled 5.6 38
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
93c2bkhA_
not modelled 5.6 29
PDB header:motor protein/metal-binding protein
Chain: A: PDB Molecule:unconventional myosin;
PDBTitle: myosin vi nucleotide-free (mdinsert2) crystal structure
94d1k8ib1
not modelled 5.5 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
95c6hygA_
not modelled 5.5 15
PDB header:immune system
Chain: A: PDB Molecule:ighg1 and ighg4 hybrid;
PDBTitle: heteromeric tandem igg4/igg1 fc
96c4c8dA_
not modelled 5.5 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 3b;
PDBTitle: crystal structure of jmjc domain of human histone 3 lysine-specific2 demethylase 3b (kdm3b)
97c4hdjA_
not modelled 5.5 16
PDB header:protein binding
Chain: A: PDB Molecule:outer membrane protein assembly factor bamb;
PDBTitle: crystal structure of bamb from pseudomonas aeruginosa
98c6cebP_
not modelled 5.5 86
PDB header:signaling protein
Chain: P: PDB Molecule:insulin receptor;
PDBTitle: insulin receptor ectodomain in complex with two insulin molecules - c12 symmetry
99c3ilqD_
not modelled 5.4 20
PDB header:immune system
Chain: D: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mcd1d with bound glycolipid bbgl-2c from2 borrelia burgdorferi

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below