Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0656c_(-)_752987_753370
DateFri Jul 26 01:50:22 BST 2019
Unique Job ID417f629531888a48
SequenceLAAATTTGTH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.370 Y:33.264 Z:49.133
Model (left) based on template c3h87B_
Top template information
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
Confidence and coverage
Confidence: 99.9% Coverage: 92%
117 residues ( 92% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h87B_



99.9 22
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
2c5sv2A_



99.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
3c4chgC_



99.8 20
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
4d1y82a1



99.8 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5d1v96a1



99.7 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c3dboB_



99.7 23
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
7c3zvkC_



99.6 14
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
8c3tndC_



99.6 16
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9c6nklA_



99.6 11
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
10c6a7vG_



99.6 21
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
11c5l6mC_



99.5 13
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
12d2h1ca1



99.4 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c4xgrG_



99.2 15
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5wzfB_



98.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
15c5x3tD_



98.5 11
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
16c2fe1A_



97.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17d2fe1a1



97.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1w8ia_



96.4 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c3ix7A_



86.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
20c3i8oA_



85.5 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
21c2lcqA_



not modelled 75.8 17
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
22c1v8pK_



not modelled 73.2 14
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
23d1v8pa_



not modelled 72.6 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24d1o4wa_



not modelled 56.8 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c5ywwA_



not modelled 54.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26d2eyqa6



not modelled 48.8 18
Fold:TRCF domain-like
Superfamily:TRCF domain-like
Family:TRCF domain
27c2qsrA_



not modelled 47.8 13
PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
28c3v32B_



not modelled 41.1 27
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
29c3v33A_



not modelled 29.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
30d1cmwa2



not modelled 22.7 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
31c5jpqd_



not modelled 18.6 17
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
32c5yz4A_



not modelled 16.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
33c2eyqA_



not modelled 12.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
34c2qipA_



not modelled 10.6 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
35c4gaoA_



not modelled 9.8 13
PDB header:ligase/peptide
Chain: A: PDB Molecule:dcn1-like protein 2;
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
36c2is9A_



not modelled 8.4 10
PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1
37c3zddA_



not modelled 7.6 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
38c2ejsA_



not modelled 7.4 22
PDB header:ligase
Chain: A: PDB Molecule:autocrine motility factor receptor, isoform 2;
PDBTitle: solution structure of ruh-076, a human cue domain
39d1xo1a2



not modelled 7.2 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
40c2lhuA_



not modelled 7.2 26
PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
41c5ifgB_



not modelled 7.2 14
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:antitoxin higa;
PDBTitle: crystal structure of higa-higb complex from e. coli
42d1tfra2



not modelled 7.2 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
43c5f4hF_



not modelled 6.7 20
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
44c2n5mA_



not modelled 6.0 20
PDB header:unknown function
Chain: A: PDB Molecule:protein khnyn;
PDBTitle: unveiling the structural determinants of kiaa0323 binding preference2 for nedd8
45d1efnb_



not modelled 5.8 24
Fold:Regulatory factor Nef
Superfamily:Regulatory factor Nef
Family:Regulatory factor Nef

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