Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0657c_(-)_753465_753620
DateFri Jul 26 01:50:22 BST 2019
Unique Job IDd90355e251e1d983
SequenceVSVTQIDLDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.810 Y:20.692 Z:28.051
Model (left) based on template c6a7vU_
Top template information
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
Confidence and coverage
Confidence: 99.1% Coverage: 88%
45 residues ( 88% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6a7vU_



99.1 47
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
2c2k5jB_



71.6 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
3c3echC_



45.8 50
PDB header:transcription, transcription regulation
Chain: C: PDB Molecule:25-mer fragment of protein armr;
PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr
4d1c1da2



44.8 40
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
5c1q5vB_



29.2 22
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
6c2bj3D_



27.9 19
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
7d1leha2



27.6 40
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
8c2p2uA_



23.9 9
PDB header:dna binding protein
Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative;
PDBTitle: crystal structure of putative host-nuclease inhibitor protein gam from2 desulfovibrio vulgaris
9d2bj7a1



23.7 17
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
10c6iyaD_



10.6 28
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
11c1bxgA_



10.3 40
PDB header:amino acid dehydrogenase
Chain: A: PDB Molecule:phenylalanine dehydrogenase;
PDBTitle: phenylalanine dehydrogenase structure in ternary complex2 with nad+ and beta-phenylpropionate
12c2ca9B_



9.9 14
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
13c2ltuA_



9.7 23
PDB header:transferase
Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-2;
PDBTitle: solution structure of autoinhibitory domain of human amp-activated2 protein kinase catalytic subunit
14c2wj9A_



8.3 31
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:intergenic-region protein;
PDBTitle: ardb
15c3sztB_



7.5 27
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
16d2hzaa1



7.4 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
17c1lehB_



7.2 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:leucine dehydrogenase;
PDBTitle: leucine dehydrogenase from bacillus sphaericus
18c5zyxA_



7.0 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:arg-trp-lys-arg-his-ile-ser-glu-gln-leu-arg-arg-arg-asp-
PDBTitle: solution nmr structure of k30 peptide in 10 mm dioctanoyl2 phosphatidylglycerol (d8pg)
19d1kwia_



6.7 36
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
20c2klzA_



6.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:ataxin-3;
PDBTitle: solution structure of the tandem uim domain of ataxin-3 complexed with2 ubiquitin
21c2hv8D_



not modelled 6.4 38
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
22c2kmgA_



not modelled 6.2 19
PDB header:gene regulation
Chain: A: PDB Molecule:klca;
PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro
23c2khsB_



not modelled 6.1 23
PDB header:hydrolase
Chain: B: PDB Molecule:nuclease;
PDBTitle: solution structure of snase121:snase(111-143) complex
24c4cgbA_



not modelled 6.1 33
PDB header:cell cycle
Chain: A: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
25c2mdvB_



not modelled 6.0 42
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
26c2q2kB_



not modelled 6.0 40
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
27c2q2kA_



not modelled 6.0 40
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
28c4cgbE_



not modelled 6.0 63
PDB header:cell cycle
Chain: E: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
29c2f4qA_



not modelled 5.7 15
PDB header:isomerase
Chain: A: PDB Molecule:type i topoisomerase, putative;
PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib
30c6dmaD_



not modelled 5.6 33
PDB header:de novo protein
Chain: D: PDB Molecule:dhd15_closed_b;
PDBTitle: dhd15_closed
31c2d7cD_



not modelled 5.6 40
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain
32d1vjla_



not modelled 5.3 30
Fold:Hypothetical protein TM0160
Superfamily:Hypothetical protein TM0160
Family:Hypothetical protein TM0160
33d2hzab1



not modelled 5.3 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
34c4nawC_



not modelled 5.2 40
PDB header:protein transport/ligase
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
35c4nawG_



not modelled 5.2 40
PDB header:protein transport/ligase
Chain: G: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
36c4nawO_



not modelled 5.2 40
PDB header:protein transport/ligase
Chain: O: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
37c4gdlC_



not modelled 5.2 40
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
38c4gdkC_



not modelled 5.2 40
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
39c4nawK_



not modelled 5.2 40
PDB header:protein transport/ligase
Chain: K: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3

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