Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0659c_(-)_754688_754996
DateFri Jul 26 01:50:22 BST 2019
Unique Job IDc648518bc8ac81a2
SequenceMRRGELWFAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.730 Y:30.477 Z:39.987
Model (left) based on template d1ub4a_
Top template information
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
Confidence and coverage
Confidence:100.0% Coverage: 94%
96 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ub4a_



100.0 21
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
2c5xe3B_



99.9 25
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
3c4mzpC_



99.9 28
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
4c5hk3B_



99.9 31
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
5c5hjzA_



99.9 26
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
6c5wygC_



99.9 27
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
7d1ne8a_



99.9 28
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
8d1m1fa_



99.9 27
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
9c5ccaA_



99.9 30
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10d3vuba_



96.5 14
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
11c3jrzA_



95.8 12
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
12c5ikjA_



64.8 19
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
13c6bwqB_



21.1 33
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
14c3c19A_



20.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
15d1rz4a1



17.9 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
16c3vdoB_



13.8 9
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
17d1okja2



12.5 50
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
18c4p7xA_



12.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-proline cis-4-hydroxylase;
PDBTitle: l-pipecolic acid-bound l-proline cis-4-hydroxylase
19c3llrA_



10.8 17
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
20c1cffB_



10.5 38
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
21c5fmzB_



not modelled 9.8 17
PDB header:transcription
Chain: B: PDB Molecule:rna-directed rna polymerase catalytic subunit;
PDBTitle: crystal structure of influenza b polymerase with bound 5' vrna
22c4wsaB_



not modelled 9.6 17
PDB header:transferase/rna
Chain: B: PDB Molecule:rna-directed rna polymerase catalytic subunit;
PDBTitle: crystal structure of influenza b polymerase bound to the vrna promoter2 (flub1 form)
23c4nohA_



not modelled 9.4 14
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipoprotein, putative;
PDBTitle: 1.5 angstrom crystal structure of putative lipoprotein from bacillus2 anthracis.
24c2l89A_



not modelled 9.2 17
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
25d1cxqa_



not modelled 9.1 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
26c2dkkA_



not modelled 8.2 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450;
PDBTitle: structure/function studies of cytochrome p450 158a1 from streptomyces2 coelicolor a3(2)
27c2z3tD_



not modelled 8.1 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome p450;
PDBTitle: crystal structure of substrate free cytochrome p450 stap2 (cyp245a1)
28c2jnsA_



not modelled 7.8 13
PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain
29c4bedA_



not modelled 7.2 17
PDB header:oxygen transport
Chain: A: PDB Molecule:hemocyanin klh1;
PDBTitle: keyhole limpet hemocyanin (klh): 9a cryoem structure and molecular2 model of the klh1 didecamer reveal the interfaces and intricate3 topology of the 160 functional units
30d2dexx3



not modelled 6.8 15
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
31c5cz1B_



not modelled 6.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain of mmtv integrase
32c2jysA_



not modelled 6.7 7
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
33d1lm8v_



not modelled 6.7 14
Fold:Prealbumin-like
Superfamily:VHL
Family:VHL
34c4bkwA_



not modelled 6.6 15
PDB header:receptor
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 9;
PDBTitle: crystal structure of the c-terminal region of human zfyve9
35d1s1fa_



not modelled 6.5 27
Fold:Cytochrome P450
Superfamily:Cytochrome P450
Family:Cytochrome P450
36c2qnhv_



not modelled 6.4 47
PDB header:ribosome
Chain: V: PDB Molecule:
PDBTitle: interactions and dynamics of the shine-dalgarno helix in the 70s2 ribosome. this file, 2qnh, contains the 30s ribosome subunit, two3 trna, and mrna molecules. 50s ribosome subunit is in the file 1vsp.
37c3v28U_



not modelled 6.0 47
PDB header:ribosome
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: crystal structure of hpf bound to the 70s ribosome. this pdb entry2 contains coordinates for the 30s subunit with bound hpf of the 2nd3 ribosome in the asu
38c4dv2U_



not modelled 5.9 47
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein thx;
PDBTitle: crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, c912a
39c3ohdU_



not modelled 5.9 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: structure of the thermus thermophilus ribosome complexed with2 erythromycin. this file contains the 30s subunit of one 70s ribosome.3 the entire crystal structure contains two 70s ribosomes.
40c3ohcU_



not modelled 5.9 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: structure of the thermus thermophilus ribosome complexed with2 erythromycin. this file contains the 30s subunit of one 70s ribosome.3 the entire crystal structure contains two 70s ribosomes.
41c3d55A_



not modelled 5.9 7
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
42d1uyra1



not modelled 5.8 35
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
43c4dv1U_



not modelled 5.5 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:ribosomal protein thx;
PDBTitle: crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, u20g, bound with streptomycin
44c1zx4B_



not modelled 5.5 18
PDB header:cell cycle
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
45d1c0ma2



not modelled 5.4 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
46c3v22U_



not modelled 5.4 47
PDB header:ribosome
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: crystal structure of rmf bound to the 70s ribosome. this pdb entry2 contains coordinates for the 30s subunit with bound rmf of the 1st3 ribosome in the asu
47c1n34V_



not modelled 5.4 47
PDB header:ribosome
Chain: V: PDB Molecule:30s ribosomal protein thx;
PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in the presence of codon and crystallographically3 disordered near-cognate transfer rna anticodon stem-loop4 mismatched at the first codon position
48c3ohyU_



not modelled 5.3 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 azithromycin. this file contains the 30s subunit of one 70s ribosome.3 the entire crystal structure contains two 70s ribosomes.
49c3oi0U_



not modelled 5.3 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 azithromycin. this file contains the 30s subunit of one 70s ribosome.3 the entire crystal structure contains two 70s ribosomes.
50c2ow8v_



not modelled 5.2 47
PDB header:ribosome
Chain: V: PDB Molecule:
PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa.
51d1h3za_



not modelled 5.1 10
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
52c1i97U_



not modelled 5.1 47
PDB header:ribosome
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: crystal structure of the 30s ribosomal subunit from thermus2 thermophilus in complex with tetracycline
53c3otoU_



not modelled 5.0 47
PDB header:ribosome
Chain: U: PDB Molecule:30s ribosomal protein thx;
PDBTitle: crystal structure of the 30s ribosomal subunit from a ksga mutant of2 thermus thermophilus (hb8)
54c4dv5U_



not modelled 5.0 47
PDB header:ribosome/antibiotic
Chain: U: PDB Molecule:ribosomal protein thx;
PDBTitle: crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, a914g, bound with streptomycin

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