Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0661c_(-)_755338_755775
DateFri Jul 26 01:50:22 BST 2019
Unique Job IDf99ca026c8ed1f1b
SequenceMIVLDTTVLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.715 Y:37.947 Z:44.448
Model (left) based on template c5wzfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
Confidence and coverage
Confidence: 99.9% Coverage: 88%
128 residues ( 88% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wzfB_



99.9 20
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
2c3zvkC_



99.8 13
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
3c5x3tD_



99.8 17
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
4c6nklA_



99.8 13
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
5c6a7vG_



99.8 14
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
6c5l6mC_



99.8 17
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
7d2h1ca1



99.8 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
8c4xgrG_



99.8 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
9c3tndC_



99.7 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
10c4chgC_



99.7 12
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
11c3h87B_



99.7 17
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
12c3dboB_



99.7 22
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
13c5sv2A_



99.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
14d1w8ia_



99.6 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15d1v96a1



99.6 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c2fe1A_



99.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17d2fe1a1



99.6 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1y82a1



99.5 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c3i8oA_



98.8 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
20d1v8pa_



98.5 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c1v8pK_



not modelled 98.5 18
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
22c3ix7A_



not modelled 98.3 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23d1o4wa_



not modelled 98.1 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c2hwwC_



not modelled 97.6 15
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
25c5jpqd_



not modelled 97.3 21
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
26c5ywwA_



not modelled 97.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c5f4hF_



not modelled 97.2 10
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
28c5yz4A_



not modelled 97.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c2lcqA_



not modelled 97.0 19
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
30c2hwyB_



not modelled 90.5 28
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4mj7B_



not modelled 89.8 11
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32c3v32B_



not modelled 89.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
33c3v33A_



not modelled 82.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c6g5iy_



not modelled 69.7 19
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
35d1cmwa2



not modelled 48.2 29
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1tfra2



not modelled 48.1 32
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37d1xo1a2



not modelled 39.5 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38c3zddA_



not modelled 38.9 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
39d1ul1x2



not modelled 29.8 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
40c2ihnA_



not modelled 24.5 32
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
41c2izoA_



not modelled 21.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
42c3q8lA_



not modelled 21.8 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
43d1mc8a2



not modelled 21.2 25
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
44d1rxwa2



not modelled 19.4 25
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
45d1a77a2



not modelled 18.8 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
46c1ut8B_



not modelled 17.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
47c3alzB_



not modelled 14.8 39
PDB header:viral protein/membrane protein
Chain: B: PDB Molecule:cdw150;
PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (form i)
48c1b43A_



not modelled 11.2 24
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
49c1a77A_



not modelled 11.0 21
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
50c1rxvA_



not modelled 10.1 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
51d1zcza2



not modelled 9.0 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
52c1cmwA_



not modelled 8.7 33
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
53d1pkxa2



not modelled 8.4 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
54d1g8ma2



not modelled 8.4 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
55c4g25A_



not modelled 7.8 31
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
56c1thzA_



not modelled 7.1 23
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening
57d1b43a2



not modelled 6.2 29
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
58c1ul1Y_



not modelled 6.0 12
PDB header:hydrolase/dna binding protein
Chain: Y: PDB Molecule:flap endonuclease-1;
PDBTitle: crystal structure of the human fen1-pcna complex
59c3qeaZ_



not modelled 5.9 18
PDB header:hydrolase/dna
Chain: Z: PDB Molecule:exonuclease 1;
PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii)
60c6c34A_



not modelled 5.2 26
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n

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