Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0677c_(mmpS5)_778480_778908
DateFri Jul 26 01:50:24 BST 2019
Unique Job IDfdbdac23df1486c9
SequenceMIGTLKRAWI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.135 Y:48.730 Z:28.030
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 62%
88 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_
100.0 51
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2d1qqda1
27.0 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3d1fv1b1
25.3 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
4d3d85d2
24.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
5d1kona_
23.4 25
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
6d1muja1
22.3 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
7d1d5mb1
21.4 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
8d1ok0a_
21.2 14
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
9c3osvC_
19.7 15
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
10c4f3qA_
17.9 22
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
11d1c16a1
17.6 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12c5t9gD_
17.5 14
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2cwt in complex with galactoisofagomine
13c2kerA_
17.3 20
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
14d1uvqb1
16.6 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
15c3rolA_
16.4 18
PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 post-translationally modified lcmv-derived gp34-41 peptide,3 comprising a nitrotyrosine at position 3
16d1mw7a_
16.3 19
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
17d1de4a1
16.1 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
18d1neza1
15.8 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
19d1k8da1
15.8 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
20c5e09A_
15.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structural insight of a trimodular halophilic cellulase with a family2 46 carbohydrate-binding module
21c2amnA_
not modelled 15.2 57
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
22c2kvzA_
not modelled 14.9 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
23d1k5na1
not modelled 14.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
24c5ee2A_
not modelled 14.6 33
PDB header:metal transport
Chain: A: PDB Molecule:hemoglobin-haptoglobin-utilization protein;
PDBTitle: the crystal structure of the c-terminal beta-barrel of hpua from2 neisseria gonorrhoeae
25d1vgka1
not modelled 14.1 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
26d1kska3
not modelled 13.9 55
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
27c5aeoA_
not modelled 13.6 27
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
28c1sebB_
not modelled 12.4 11
PDB header:complex (mhc ii/peptide/toxin)
Chain: B: PDB Molecule:hla class ii histocompatibility antigen;
PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb
29d2fa8a1
not modelled 12.4 42
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
30d1lfpa_
not modelled 12.3 21
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
31d1hx0a1
not modelled 12.0 17
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
32c2zw3B_
not modelled 12.0 17
PDB header:cell adhesion
Chain: B: PDB Molecule:gap junction beta-2 protein;
PDBTitle: structure of the connexin-26 gap junction channel at 3.52 angstrom resolution
33c2obkE_
not modelled 12.0 47
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain;
PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6.
34d3dhpa1
not modelled 11.3 20
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
35c6b6lB_
not modelled 11.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: the crystal structure of glycosyl hydrolase family 2 (gh2) member from2 bacteroides cellulosilyticus dsm 14838
36d1fnga1
not modelled 10.9 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
37d1kjva1
not modelled 10.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
38c6dxuA_
not modelled 10.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
39d1uvqa1
not modelled 10.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
40d1ywka1
not modelled 10.4 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
41c5lnkm_
not modelled 10.3 36
PDB header:oxidoreductase
Chain: M: PDB Molecule:mitochondrial complex i, nd4 subunit;
PDBTitle: entire ovine respiratory complex i
42c6d1pB_
not modelled 10.3 4
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: apo structure of bacteroides uniformis beta-glucuronidase 3
43c3usaH_
not modelled 10.0 14
PDB header:immune system
Chain: H: PDB Molecule:hla class ii histocompatibility antigen, do beta chain;
PDBTitle: mhc class ii homolog structure
44c6dxuB_
not modelled 9.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
45d1zs8a1
not modelled 9.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
46c3owrA_
not modelled 9.7 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a putative secreted protein (bf4250) from2 bacteroides fragilis nctc 9343 at 1.81 a resolution
47c2kncA_
not modelled 9.7 29
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
48c2kt7A_
not modelled 9.4 25
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
49d1mhca1
not modelled 9.3 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
50c2mgyA_
not modelled 9.1 28
PDB header:membrane protein
Chain: A: PDB Molecule:translocator protein;
PDBTitle: solution structure of the mitochondrial translocator protein (tspo) in2 complex with its high-affinity ligand pk11195
51c1ywkE_
not modelled 9.0 38
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
52d1wbxa1
not modelled 8.9 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
53c1q40C_
not modelled 8.8 33
PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
54c4hhuA_
not modelled 8.8 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:or280;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or280.
55d1s9va1
not modelled 8.8 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
56c2p0gB_
not modelled 8.8 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:selenoprotein w-related protein;
PDBTitle: crystal structure of selenoprotein w-related protein from vibrio2 cholerae. northeast structural genomics target vcr75
57d1klub1
not modelled 8.8 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
58d1lk2a1
not modelled 8.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
59d1es0b1
not modelled 8.7 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
60c4kw3A_
not modelled 8.5 29
PDB header:viral protein
Chain: A: PDB Molecule:ns1;
PDBTitle: crystal structure of the non-structural protein 1 n-terminal origin-2 recognition/nickase domain from the emerging human bocavirus
61d1u8ib2
not modelled 8.5 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
62d1dr9a2
not modelled 8.3 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
63d2cs4a1
not modelled 8.2 35
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
64d1xrua1
not modelled 8.1 63
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
65c3usaG_
not modelled 8.1 10
PDB header:immune system
Chain: G: PDB Molecule:hla class ii histocompatibility antigen, do alpha chain;
PDBTitle: mhc class ii homolog structure
66d2rb6a1
not modelled 7.8 22
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
67c3gebC_
not modelled 7.8 23
PDB header:hydrolase
Chain: C: PDB Molecule:eyes absent homolog 2;
PDBTitle: crystal structure of edeya2
68d1fngb1
not modelled 7.7 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
69c2vdaB_
not modelled 7.5 35
PDB header:protein transport
Chain: B: PDB Molecule:maltoporin;
PDBTitle: solution structure of the seca-signal peptide complex
70d1jaea1
not modelled 7.4 21
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
71d1jk8a1
not modelled 7.4 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
72d1i4fa1
not modelled 7.3 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
73d1dmla1
not modelled 7.3 20
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
74c2nykA_
not modelled 7.2 30
PDB header:viral protein
Chain: A: PDB Molecule:m157;
PDBTitle: crystal structure of m157 from mouse cytomegalovirus
75d1of5b_
not modelled 6.9 27
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
76c4ypjB_
not modelled 6.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:beta galactosidase;
PDBTitle: x-ray structure of the mutant of glycoside hydrolase
77c2kppA_
not modelled 6.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
78d1k8ib1
not modelled 6.6 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
79d1sawa_
not modelled 6.6 22
Fold:FAH
Superfamily:FAH
Family:FAH
80c4ux5B_
not modelled 6.5 22
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mbp1;
PDBTitle: structure of dna complex of pcg2
81c6mhqE_
not modelled 6.3 17
PDB header:membrane protein
Chain: E: PDB Molecule:gap junction alpha-3 protein, connexin-46;
PDBTitle: structure of connexin-46 intercellular gap junction channel at 3.42 angstrom resolution by cryoem
82d1dgja2
not modelled 6.3 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
83c3a0hJ_
not modelled 6.2 60
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
84d2axtj1
not modelled 6.2 60
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
85c1iebD_
not modelled 6.2 10
PDB header:histocompatibility antigen
Chain: D: PDB Molecule:mhc class ii i-ek;
PDBTitle: histocompatibility antigen
86c2na6C_
not modelled 6.2 13
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
87c2na6B_
not modelled 6.2 13
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
88c2na6A_
not modelled 6.2 13
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
89d1hyrc1
not modelled 6.2 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
90d2oz4a2
not modelled 6.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
91d1vlba2
not modelled 6.1 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
92c2ojlB_
not modelled 6.0 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68.
93d1iaka1
not modelled 6.0 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
94c4gdzA_
not modelled 5.9 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4251 family protein (bacegg_02002) from2 bacteroides eggerthii dsm 20697 at 1.95 a resolution
95c2npbA_
not modelled 5.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:selenoprotein w;
PDBTitle: nmr solution structure of mouse selw
96d1vcaa1
not modelled 5.9 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
97c3s6pC_
not modelled 5.8 15
PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure of helicoverpa armigera stunt virus
98d1r3ha1
not modelled 5.8 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
99d1pkla1
not modelled 5.8 14
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below