Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0679c_(-)_779546_780043
DateFri Jul 26 01:50:24 BST 2019
Unique Job ID03172b4b220a158a
SequenceVVEKPLRADR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.515 Y:16.893 Z:28.354
Model (left) based on template d1ppjw_
Top template information
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Confidence and coverage
Confidence: 33.5% Coverage: 12%
20 residues ( 12% of your sequence) have been modelled with 33.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ppjw_
33.5 35
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
2c3sulA_
29.8 33
PDB header:unknown function
Chain: A: PDB Molecule:cerato-platanin-like protein;
PDBTitle: crystal structure of cerato-platanin 3 from m. perniciosa (mpcp3)
3c5hceD_
24.5 24
PDB header:immune system
Chain: D: PDB Molecule:rhipicephalus appendiculatus raci1;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and rhipicephalus appendiculatus raci1
4c3d0jA_
24.1 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ca_c3497;
PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824
5d2pi2e1
16.6 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
6d3cx5i1
16.2 25
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
7d1vqoe1
16.1 15
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
8c2pqaB_
15.1 18
PDB header:replication
Chain: B: PDB Molecule:replication protein a 14 kda subunit;
PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
9c6az5A_
14.8 39
PDB header:sugar binding protein
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of cbmd (family cbm41) from eubacterium rectale2 amy13k
10c5muzA_
14.0 24
PDB header:viral protein
Chain: A: PDB Molecule:l protein;
PDBTitle: structure of a c-terminal domain of a reptarenavirus l protein
11c3k8rA_
13.8 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution
12c2fynO_
13.3 29
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
13c5e50A_
13.0 16
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: aplf/xrcc4 complex
14c2kklA_
12.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mb1858;
PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155).
15c6f0kA_
12.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
16c5avoA_
12.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of the reduced form of homoserine dehydrogenase from2 sulfolobus tokodaii.
17c3sukB_
12.3 31
PDB header:unknown function
Chain: B: PDB Molecule:cerato-platanin-like protein;
PDBTitle: crystal structure of cerato-platanin 2 from m. perniciosa (mpcp2)
18d1rl6a1
11.6 18
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
19c3sujA_
10.2 27
PDB header:unknown function
Chain: A: PDB Molecule:cerato-platanin 1;
PDBTitle: crystal structure of cerato-platanin 1 from m. perniciosa (mpcp1)
20c2n12A_
10.1 38
PDB header:motor protein,protein transport
Chain: A: PDB Molecule:unconventional myosin-vi;
PDBTitle: solution structure of human myosin vi isoform3 (1050-1131)
21c3sluB_
not modelled 9.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
22c3j21F_
not modelled 9.4 13
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
23c3qr8A_
not modelled 8.7 15
PDB header:viral protein
Chain: A: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of the bacteriophage p2 membrane-piercing protein2 gpv
24d1zata2
not modelled 7.5 9
Fold:L,D-transpeptidase pre-catalytic domain-like
Superfamily:L,D-transpeptidase pre-catalytic domain-like
Family:L,D-transpeptidase pre-catalytic domain-like
25c6hwhB_
not modelled 7.0 12
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
26c3ljyA_
not modelled 6.7 16
PDB header:cell adhesion
Chain: A: PDB Molecule:putative adhesin;
PDBTitle: crystal structure of putative adhesin (yp_001304413.1) from2 parabacteroides distasonis atcc 8503 at 2.41 a resolution
27c3oggA_
not modelled 6.6 13
PDB header:toxin
Chain: A: PDB Molecule:botulinum neurotoxin type d;
PDBTitle: crystal structure of the receptor binding domain of botulinum2 neurotoxin d
28c2lowA_
not modelled 6.2 25
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
29c2kdcC_
not modelled 6.1 17
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
30c4tmdA_
not modelled 5.9 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray structure of putative uncharacterized protein (rv0999 ortholog)2 from mycobacterium smegmatis
31c1vw4H_
not modelled 5.9 14
PDB header:ribosome
Chain: H: PDB Molecule:54s ribosomal protein l23, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
32c3j3wJ_
not modelled 5.9 17
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l13;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
33d1k4za_
not modelled 5.8 18
Fold:Single-stranded right-handed beta-helix
Superfamily:C-terminal domain of adenylylcyclase associated protein
Family:C-terminal domain of adenylylcyclase associated protein
34d1q8da_
not modelled 5.7 38
Fold:GDNF receptor-like
Superfamily:GDNF receptor-like
Family:GDNF receptor-like
35d1fcda3
not modelled 5.7 17
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
36c1yn3A_
not modelled 5.6 41
PDB header:toxin, protein binding
Chain: A: PDB Molecule:truncated cell surface protein map-w;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
37d1l5pa_
not modelled 5.6 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
38c3petA_
not modelled 5.5 15
PDB header:cell adhesion
Chain: A: PDB Molecule:putative adhesin;
PDBTitle: crystal structure of a putative adhesin (bf0245) from bacteroides2 fragilis nctc 9343 at 2.07 a resolution
39c2m5sA_
not modelled 5.4 22
PDB header:viral protein
Chain: A: PDB Molecule:coat protein;
PDBTitle: high-resolution nmr structure and cryo-em imaging support multiple2 functional roles for the accessory i-domain of phage p22 coat protein
40c1yn4A_
not modelled 5.3 29
PDB header:unknown function
Chain: A: PDB Molecule:eaph1;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
41c1yn5B_
not modelled 5.3 29
PDB header:unknown function
Chain: B: PDB Molecule:eaph2;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below