Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0683_(rpsG)_781937_782407
DateFri Jul 26 01:50:25 BST 2019
Unique Job ID8b0188d933d1a6db
SequenceMPRKGPAPKR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.334 Y:55.260 Z:34.627
Model (left) based on template c5o5jG_
Top template information
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
155 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jG_



100.0 96
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2c3j0xJ_



100.0 53
PDB header:ribosome
Chain: J: PDB Molecule:30s ribosomal protein s7;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
3c3gtyS_



100.0 56
PDB header:chaperone/ribosomal protein
Chain: S: PDB Molecule:30s ribosomal protein s7;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone
4c3bbnG_



100.0 45
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
5d2qalg1



100.0 51
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
6c3j6vG_



100.0 32
PDB header:ribosome
Chain: G: PDB Molecule:28s ribosomal protein s7, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
7c1vs5G_



100.0 51
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with the antibiotic kasugamyin at 3.5a resolution. this file3 contains the 30s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400.
8d1rssa_



100.0 54
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
9d1husa_



100.0 62
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
10c2xzmG_



100.0 25
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
11c3zey2_



100.0 30
PDB header:ribosome
Chain: 2: PDB Molecule:40s ribosomal protein s5, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
12d1iqva_



100.0 30
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
13c1s1hG_



100.0 28
PDB header:ribosome
Chain: G: PDB Molecule:40s ribosomal protein s5;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
14c3izbF_



100.0 28
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
15c2zkqg_



100.0 29
PDB header:ribosomal protein/rna
Chain: G: PDB Molecule:rna helix;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
16c5xyiF_



100.0 28
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s5-b, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
17c2kn8A_



39.2 22
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
18d1u5ta1



23.2 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
19c2hv8D_



10.4 31
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
20d1o7fa1



10.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
21c5kevA_



not modelled 9.6 18
PDB header:signaling protein
Chain: A: PDB Molecule:vtra protein;
PDBTitle: vibrio parahaemolyticus vtra/vtrc complex
22c6hv8A_



not modelled 8.9 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: cryo-em structure of s. cerevisiae polymerase epsilon deltacat mutant
23c3u6xU_



not modelled 8.0 50
PDB header:viral protein
Chain: U: PDB Molecule:orf48;
PDBTitle: phage tp901-1 baseplate tripod
24c1u5tA_



not modelled 7.8 23
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
25c5yrzC_



not modelled 7.7 20
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
26c1w7pD_



not modelled 7.1 12
PDB header:protein transport
Chain: D: PDB Molecule:vps36p, ylr417w;
PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36)
27c4ioxB_



not modelled 7.0 27
PDB header:viral protein
Chain: B: PDB Molecule:tripartite terminase subunit ul15;
PDBTitle: the structure of the herpes simplex virus dna-packaging motor pul15 c-2 terminal nuclease domain provides insights into cleavage of3 concatemeric viral genome precursors
28c3kmpA_



not modelled 6.6 20
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:smad1-mh1;
PDBTitle: crystal structure of smad1-mh1/dna complex
29c3g36D_



not modelled 6.0 18
PDB header:nuclear protein
Chain: D: PDB Molecule:protein dpy-30 homolog;
PDBTitle: crystal structure of the human dpy-30-like c-terminal domain
30c6rrkC_



not modelled 5.9 15
PDB header:gene regulation
Chain: C: PDB Molecule:double-strand-break repair protein rad21 homolog;
PDBTitle: crystal structure of the central region of human cohesin subunit stag12 in complex with rad21 peptide
31c2lurA_



not modelled 5.8 75
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
32d3bula1



not modelled 5.8 21
Fold:Methionine synthase domain-like
Superfamily:Methionine synthase domain
Family:Methionine synthase domain
33d1n8va_



not modelled 5.5 28
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
34d1kx9b_



not modelled 5.3 28
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2

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