Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0686_(-)_786152_786949
DateFri Jul 26 01:50:25 BST 2019
Unique Job ID21fc0674f97ab5ef
SequenceVLARYIKMQL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.718 Y:17.426 Z:29.930
Model (left) based on template c3ddrC_
Top template information
PDB header:membrane protein/heme binding protein
Chain: C: PDB Molecule:hemophore hasa;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr-ile671gly2 mutant in complex with its hemophore hasa and heme
Confidence and coverage
Confidence: 74.2% Coverage: 9%
23 residues ( 9% of your sequence) have been modelled with 74.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ddrC_
74.2 39
PDB header:membrane protein/heme binding protein
Chain: C: PDB Molecule:hemophore hasa;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr-ile671gly2 mutant in complex with its hemophore hasa and heme
2d1dk0a_
70.8 39
Fold:Heme-binding protein A (HasA)
Superfamily:Heme-binding protein A (HasA)
Family:Heme-binding protein A (HasA)
3c4ynhA_
53.9 38
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 5;
PDBTitle: structure of the c. elegans sas-5 implico dimerization domain
4c1u6tA_
47.5 26
PDB header:protein binding, signaling protein
Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like
PDBTitle: crystal structure of the human sh3 binding glutamic-rich2 protein like
5c4k2bA_
37.6 17
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
6c2ct6A_
37.2 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like
PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2
7c6eeqA_
35.5 19
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxyphenylacetaldehyde synthase;
PDBTitle: crystal structure of rhodiola rosea 4-hydroxyphenylacetaldehyde2 synthase
8d1s3ia1
30.4 34
Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
9c3wknG_
29.9 36
PDB header:immune system
Chain: G: PDB Molecule:affinger p17;
PDBTitle: crystal structure of the artificial protein affinger p17 (af.p17)2 complexed with fc fragment of human igg
10d1hjqa_
29.3 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
11c4uz0B_
28.6 41
PDB header:apoptosis
Chain: B: PDB Molecule:nucleolar protein 3;
PDBTitle: crystal structure of apoptosis repressor with card (arc)
12d1r3jc_
26.8 11
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
13d2bw0a1
25.7 34
Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
14d1m5wa_
25.3 19
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
15d1dcja_
24.2 16
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
16d3bc8a1
22.9 10
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
17c2hzpA_
21.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
18d2cspa1
19.5 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
19c4jesA_
19.3 25
PDB header:heme binding protein, transport protein
Chain: A: PDB Molecule:hemophore hasa;
PDBTitle: 1.6a resolution apo structure of the hemophore hasa from yersinia2 pestis (hexagonal form)
20c6fucA_
18.8 26
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside phosphotransferase;
PDBTitle: structure of aminoglycoside phosphotransferase aph(3'')-id from2 streptomyces rimosus atcc10970
21d2qmwa2
not modelled 18.7 21
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
22c5dlcC_
not modelled 18.3 23
PDB header:transferase
Chain: C: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase2 from pseudomonas aeruginosa
23c5mqcA_
not modelled 18.1 40
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: structure of black queen cell virus
24d1t1va_
not modelled 17.7 28
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like)
25c6hwhB_
not modelled 17.1 17
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
26c3bcxA_
not modelled 16.1 14
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
27d1jdqa_
not modelled 15.4 16
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
28d1h3fa2
not modelled 15.1 13
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
29c6nzxA_
not modelled 15.0 32
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome b5;
PDBTitle: hadesarchaea ynp_n21 cytochrome b5 domain protein (kuo41884.1)
30c6eewC_
not modelled 14.5 13
PDB header:lyase
Chain: C: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of catharanthus roseus tryptophan decarboxylase in2 complex with l-tryptophan
31c3e9kA_
not modelled 14.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
32c3madA_
not modelled 14.0 12
PDB header:lyase
Chain: A: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (symmetric form)
33c3uh8A_
not modelled 13.9 14
PDB header:viral protein
Chain: A: PDB Molecule:orf48;
PDBTitle: n-terminal domain of phage tp901-1 orf48
34c3hzsA_
not modelled 13.6 23
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin
35d1sd4a_
not modelled 13.6 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
36c3e2sA_
not modelled 13.5 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure reduced puta86-630 mutant y540s complexed with l-2 proline
37d1hjsa_
not modelled 13.4 22
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38c2c5sA_
not modelled 13.2 31
PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
39d2g9wa1
not modelled 13.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
40d1dfoa_
not modelled 12.4 7
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
41c2dajA_
not modelled 12.4 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa0977 protein;
PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human cobl-like 1 protein
42c2mdaB_
not modelled 11.9 5
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
43c1vbkA_
not modelled 11.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
44c3cjtP_
not modelled 11.8 21
PDB header:transferase/ribosomal protein
Chain: P: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11
45d2byla1
not modelled 11.5 15
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
46d1je3a_
not modelled 11.4 10
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
47c4mcjC_
not modelled 11.3 17
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nucleoside deoxyribosyltransferase2 (bdi_0649) from parabacteroides distasonis atcc 8503 at 2.40 a3 resolution
48c3vmtA_
not modelled 11.0 23
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog
49d1nm3a2
not modelled 11.0 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
50d2f06a1
not modelled 10.8 30
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
51d1i7aa_
not modelled 10.8 15
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
52c2jo8B_
not modelled 10.8 36
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 4;
PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1)
53d1pava_
not modelled 10.4 12
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
54c4nz3A_
not modelled 10.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:deacetylase da1;
PDBTitle: structure of vibrio cholerae chitin de-n-acetylase in complex with2 di(n-acetyl-d-glucosamine) (cbs) in p 21 21 21
55d1q25a2
not modelled 10.2 32
Fold:Mannose 6-phosphate receptor domain
Superfamily:Mannose 6-phosphate receptor domain
Family:Mannose 6-phosphate receptor domain
56c6cjbA_
not modelled 10.2 13
PDB header:lyase
Chain: A: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from legionella2 pneumophila philadelphia 1 covalently bound to pyridoxal phosphate
57d2nn4a1
not modelled 10.2 19
Fold:YqgQ-like
Superfamily:YqgQ-like
Family:YqgQ-like
58c3hl2D_
not modelled 10.2 19
PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex
59d1phza1
not modelled 10.2 25
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
60d2odgc1
not modelled 10.1 28
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
61c4l0nG_
not modelled 10.1 32
PDB header:transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase 3;
PDBTitle: crystal structure of stk3 (mst2) sarah domain
62d1nsja_
not modelled 9.3 12
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
63c5w70B_
not modelled 9.2 8
PDB header:transferase
Chain: B: PDB Molecule:l-glutamine:2-deoxy-scyllo-inosose aminotransferase;
PDBTitle: x-ray structure of rbmb from streptomyces ribosidificus
64d1okra_
not modelled 9.0 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
65c4wxfC_
not modelled 9.0 18
PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of l-serine hydroxymethyltransferase in complex with2 glycine
66c6bn1A_
not modelled 8.5 33
PDB header:signaling protein
Chain: A: PDB Molecule:serine/threonine-protein kinase hippo;
PDBTitle: salvador hippo sarah domain complex
67d1vefa1
not modelled 8.5 11
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
68c5vc2A_
not modelled 8.5 13
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of a serine hydroxymethyltransferase from2 helicobacter pylori
69c6nmiF_
not modelled 8.4 17
PDB header:transcription
Chain: F: PDB Molecule:general transcription factor iih subunit 3, p34;
PDBTitle: cryo-em structure of the human tfiih core complex
70d1a6ca1
not modelled 8.3 7
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
71c3k1qE_
not modelled 8.2 29
PDB header:
PDB COMPND:
72d3cjsb1
not modelled 8.1 21
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
73c6b4eD_
not modelled 7.9 44
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin nup42;
PDBTitle: crystal structure of saccharomyces cerevisiae gle1 ctd-nup42 gbm2 complex
74c3lv2A_
not modelled 7.9 14
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
75d1p6ra_
not modelled 7.9 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
76c3gk0H_
not modelled 7.8 16
PDB header:transferase
Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein from2 burkholderia pseudomallei
77d1xbpg2
not modelled 7.7 16
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
78c4qgrA_
not modelled 7.6 15
PDB header:transferase
Chain: A: PDB Molecule:degt/dnrj/eryc1/strs aminotransferase;
PDBTitle: crystal structure of a degt dnrj eryc1 strs aminotransferase from2 brucella abortus
79d1f4nb_
not modelled 7.5 46
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
80d2jdih2
not modelled 7.5 22
Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain
81c2m46A_
not modelled 7.5 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase, putative;
PDBTitle: solution nmr structure of sacol0876 from staphylococcus aureus col,2 nesg target zr353 and csgid target idp00841
82c2qmwA_
not modelled 7.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:prephenate dehydratase;
PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50
83c2gaaA_
not modelled 7.4 31
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 39.9 kda protein;
PDBTitle: crystal structure of yfh7 from saccharomyces cerevisiae: a2 putative p-loop containing kinase with a circular3 permutation.
84d1exta2
not modelled 7.3 38
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
85c3ovcA_
not modelled 7.2 29
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:hygromycin-b 4-o-kinase;
PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(4)-ia
86c5a6eB_
not modelled 7.2 20
PDB header:transport
Chain: B: PDB Molecule:pore domain of potassium channel subfamily t member 1;
PDBTitle: cryo-em structure of the slo2.2 na-activated k channel
87c4bheI_
not modelled 7.2 8
PDB header:transferase
Chain: I: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: methanococcus jannaschii serine hydroxymethyl-transferase2 in complex with plp
88c3rfuC_
not modelled 6.9 17
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:copper efflux atpase;
PDBTitle: crystal structure of a copper-transporting pib-type atpase
89d1f4na_
not modelled 6.9 46
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
90c4lubA_
not modelled 6.8 19
PDB header:lyase
Chain: A: PDB Molecule:putative prephenate dehydratase;
PDBTitle: x-ray structure of prephenate dehydratase from streptococcus mutans
91c6b4eC_
not modelled 6.6 44
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup42;
PDBTitle: crystal structure of saccharomyces cerevisiae gle1 ctd-nup42 gbm2 complex
92c2cazB_
not modelled 6.5 16
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vps28;
PDBTitle: escrt-i core
93d2cazb1
not modelled 6.5 16
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
94d1t4aa_
not modelled 6.5 29
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
95c6enzA_
not modelled 6.4 25
PDB header:lyase
Chain: A: PDB Molecule:acidic amino acid decarboxylase gadl1;
PDBTitle: crystal structure of mouse gadl1
96c2k4bA_
not modelled 6.4 0
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: copr repressor structure
97d2f6mb1
not modelled 6.3 16
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
98c5uidC_
not modelled 6.3 18
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase tlmj;
PDBTitle: the crystal structure of an aminotransferase tlmj from2 streptoalloteichus hindustanus
99d1rhzb_
not modelled 6.2 20
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below