Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0690c_(-)_790027_791076
DateFri Jul 26 01:50:26 BST 2019
Unique Job IDbf82b5d935eb3411
SequenceVTGTEHLVHT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.304 Y:32.079 Z:42.612
Model (left) based on template c5dplB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:protein lysine methyltransferase 2;
PDBTitle: the structure of pkmt2 from rickettsia typhi in complex with adohcy
Confidence and coverage
Confidence: 72.9% Coverage: 27%
93 residues ( 27% of your sequence) have been modelled with 72.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5dplB_



72.9 17
PDB header:transferase
Chain: B: PDB Molecule:protein lysine methyltransferase 2;
PDBTitle: the structure of pkmt2 from rickettsia typhi in complex with adohcy
2c6cn0B_



70.0 17
PDB header:transferase
Chain: B: PDB Molecule:16s rrna (guanine(1405)-n(7))-methyltransferase;
PDBTitle: 2.95 angstrom crystal structure of 16s rrna methylase from proteus2 mirabilis
3c5do0A_



56.4 18
PDB header:transferase
Chain: A: PDB Molecule:protein lysine methyltransferase 1;
PDBTitle: the structure of pkmt1 from rickettsia prowazekii
4c5mptA_



50.0 28
PDB header:transferase
Chain: A: PDB Molecule:citrinin polyketide synthase;
PDBTitle: structure of the citrinin polyketide synthase cmet domain
5d1af7a2



45.2 16
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain
6c3tfwB_



30.7 18
PDB header:transferase
Chain: B: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of a putative o-methyltransferase from klebsiella2 pneumoniae
7c3fzgA_



23.9 17
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of the 16s rrna methylase arma
8c5n5dA_



23.8 16
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of the o-methyltransferase tomg from streptomyces2 achromogenes involved in tomaymycin synthesis in complex with sam
9d1kyza2



22.9 19
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
10d1ogmx1



22.5 31
Fold:Dextranase, N-terminal domain
Superfamily:Dextranase, N-terminal domain
Family:Dextranase, N-terminal domain
11d1fyea_



22.0 25
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
12d1qt1a_



21.9 20
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
13c2yr0A_



21.5 13
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
14c2ys9A_



20.1 23
PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
15c5xlxD_



19.1 15
PDB header:transferase
Chain: D: PDB Molecule:chemotaxis protein methyltransferase 1;
PDBTitle: crystal structure of the c-terminal domain of cher1 containing sah
16c3ssmB_



17.8 16
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 1
17d2bm8a1



16.5 29
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CmcI-like
18c4azsA_



16.3 11
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase wbdd;
PDBTitle: high resolution (2.2 a) crystal structure of wbdd.
19c5ufmB_



16.1 15
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase domain protein;
PDBTitle: crystal structure of burkholderia thailandensis 1,6-2 didemethyltoxoflavin-n1-methyltransferase with bound 1,6-3 didemethyltoxoflavin and s-adenosylhomocysteine
20c2gslE_



15.2 12
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:hypothetical protein;
PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1.
21c2r6zA_



not modelled 14.3 16
PDB header:transferase
Chain: A: PDB Molecule:upf0341 protein in rsp 3' region;
PDBTitle: crystal structure of the sam-dependent methyltransferase ngo1261 from2 neisseria gonorrhoeae, northeast structural genomics consortium3 target ngr48
22c4dnhA_



not modelled 14.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein smc04132 from sinorhizobium2 meliloti 1021
23d1u61a_



not modelled 13.6 9
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:RNase III catalytic domain-like
24c3tr6A_



not modelled 13.4 14
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: structure of a o-methyltransferase from coxiella burnetii
25c6g4wq_



not modelled 11.6 33
PDB header:ribosome
Chain: Q: PDB Molecule:40s ribosomal protein s16;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
26d1j30a_



not modelled 11.6 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
27d1afra_



not modelled 11.0 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
28d1vpra1



not modelled 10.9 35
Fold:Lipocalins
Superfamily:Lipocalins
Family:Dinoflagellate luciferase repeat
29d1uxda_



not modelled 10.6 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
30c5zy5B_



not modelled 10.5 20
PDB header:transferase
Chain: B: PDB Molecule:probable catechol o-methyltransferase 1;
PDBTitle: spcomt apo structure
31c3icaB_



not modelled 9.9 41
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: the crystal structure of the beta subunit of a phenylalanyl-trna2 synthetase from porphyromonas gingivalis w83
32c3duwB_



not modelled 9.7 19
PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase, putative;
PDBTitle: crystal structural analysis of the o-methyltransferase from2 bacillus cereus in complex sah
33c3l4gL_



not modelled 9.6 45
PDB header:ligase
Chain: L: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
34c4xalA_



not modelled 9.4 27
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein vp22;
PDBTitle: crystal structure of the conserved core domain of vp22 from hsv-1
35c5w7kA_



not modelled 9.0 17
PDB header:transferase
Chain: A: PDB Molecule:oxag;
PDBTitle: crystal structure of oxag
36d1sv0c_



not modelled 8.3 17
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
37d1ndba1



not modelled 8.2 18
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
38d2d32a1



not modelled 7.9 15
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase
39c2qpxA_



not modelled 7.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:predicted metal-dependent hydrolase of the tim-barrel fold;
PDBTitle: crystal structure of putative metal-dependent hydrolase (yp_805737.1)2 from lactobacillus casei atcc 334 at 1.40 a resolution
40c3ig2B_



not modelled 7.4 27
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: the crystal structure of a putative phenylalanyl-trna synthetase2 (phers) beta chain domain from bacteroides fragilis to 2.1a
41c6c8rA_



not modelled 7.2 38
PDB header:transferase
Chain: A: PDB Molecule:loganic acid o-methyltransferase;
PDBTitle: loganic acid o-methyltransferase complexed with sah and loganic acid
42c2l8nA_



not modelled 6.6 6
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
43d1uxca_



not modelled 6.6 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
44c3b5iB_



not modelled 6.5 29
PDB header:transferase
Chain: B: PDB Molecule:s-adenosyl-l-methionine:salicylic acid carboxyl
PDBTitle: crystal structure of indole-3-acetic acid methyltransferase
45d1vg0a2



not modelled 6.4 29
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GDI-like
46c4azwA_



not modelled 6.2 12
PDB header:transferase
Chain: A: PDB Molecule:wbdd;
PDBTitle: crystal structure of monomeric wbdd.
47d1hi9a_



not modelled 6.2 17
Fold:Dipeptide transport protein
Superfamily:Dipeptide transport protein
Family:Dipeptide transport protein
48c2j5hA_



not modelled 6.1 33
PDB header:hormone/growth factor
Chain: A: PDB Molecule:teratocarcinoma-derived growth factor;
PDBTitle: nmr analysis of mouse cripto cfc domain
49c4d0uD_



not modelled 6.1 33
PDB header:viral protein
Chain: D: PDB Molecule:fiber protein;
PDBTitle: crystal structure of the fiber head domain of the atadenovirus snake2 adenovirus 1, selenomethionine-derivative
50c2lxrA_



not modelled 5.8 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase i subunit e;
PDBTitle: solution structure of hp1264 from helicobacter pylori
51d1jjcb5



not modelled 5.7 41
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
52c4p8bA_



not modelled 5.7 10
PDB header:transport protein
Chain: A: PDB Molecule:trap-type transporter, periplasmic component;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound3 (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate)
53c4lfyB_



not modelled 5.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:dihydroorotase;
PDBTitle: crystal structure of a dihydroorotase from burkholderia cenocepacia2 j2315
54c2kluA_



not modelled 5.4 33
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
55c3vptA_



not modelled 5.4 19
PDB header:transferase
Chain: A: PDB Molecule:glutathione s-transferase sigma;
PDBTitle: crystal structure of bombyx mori sigma-class glutathione transferase2 in apo form
56c3r3hA_



not modelled 5.3 19
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase, sam-dependent;
PDBTitle: crystal structure of o-methyltransferase from legionella pneumophila
57d2gfqa1



not modelled 5.3 46
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
58c3wdkA_



not modelled 5.3 18
PDB header:ligase
Chain: A: PDB Molecule:4-phosphopantoate--beta-alanine ligase;
PDBTitle: crystal structure of 4-phosphopantoate-beta-alanine ligase complexed2 with reaction intermediate
59c3jzeC_



not modelled 5.2 12
PDB header:hydrolase
Chain: C: PDB Molecule:dihydroorotase;
PDBTitle: 1.8 angstrom resolution crystal structure of dihydroorotase (pyrc)2 from salmonella enterica subsp. enterica serovar typhimurium str. lt2
60c5zl6A_



not modelled 5.1 5
PDB header:isomerase
Chain: A: PDB Molecule:histidine racemase;
PDBTitle: histidine racemase from leuconostoc mesenteroides subsp. sake nbrc2 102480
61c3jwgA_



not modelled 5.0 19
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain of2 bacterial-cthen1-c

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