Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0692_(-)_791834_792163
DateFri Jul 26 01:50:26 BST 2019
Unique Job IDc816ffd93afa3335
SequenceVWGLLTVPAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.170 Y:30.718 Z:28.043
Model (left) based on template c6jx3B_
Top template information
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
Confidence and coverage
Confidence: 72.4% Coverage: 72%
78 residues ( 72% of your sequence) have been modelled with 72.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6jx3B_



72.4 22
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
2d1aisa1



59.8 24
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
3d1nh2a1



54.0 16
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
4d1cdwa1



51.7 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
5d1aisa2



49.6 26
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
6d1mp9a1



46.4 24
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
7d1qnaa1



43.9 16
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
8d1cdwa2



38.0 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
9d1mp9a2



35.9 21
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
10d1nh2a2



28.6 21
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
11d1qnaa2



28.6 21
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
12c5k83C_



19.8 23
PDB header:hydrolase
Chain: C: PDB Molecule:apolipoprotein b mrna editing enzyme, catalytic peptide-
PDBTitle: crystal structure of a primate apobec3g n-domain, in complex with2 ssdna
13d2fsja2



18.2 43
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
14c5z3qD_



18.1 40
PDB header:viral protein
Chain: D: PDB Molecule:pv-2c;
PDBTitle: crystal structure of a soluble fragment of poliovirus 2c atpase (2.552 angstrom)
15c3deeA_



17.1 10
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
16c5grbF_



15.0 30
PDB header:hydrolase/inhibitor
Chain: F: PDB Molecule:ev71 2c atpase;
PDBTitle: crystal structure of 2c helicase from enterovirus 71 (ev71) bound with2 atpgammas
17d2gtln1



12.8 45
Fold:Streptavidin-like
Superfamily:Extracellular hemoglobin linker subunit, receptor domain
Family:Extracellular hemoglobin linker subunit, receptor domain
18c1mp9B_



12.7 21
PDB header:dna binding protein
Chain: B: PDB Molecule:tata-binding protein;
PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
19c1d3uA_



12.5 26
PDB header:gene regulation/dna
Chain: A: PDB Molecule:tata-binding protein;
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
20c2nytB_



12.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2;
PDBTitle: the apobec2 crystal structure and functional implications2 for aid
21d2gtlm1



not modelled 12.0 45
Fold:Streptavidin-like
Superfamily:Extracellular hemoglobin linker subunit, receptor domain
Family:Extracellular hemoglobin linker subunit, receptor domain
22c1ngmM_



not modelled 11.3 16
PDB header:transcription/dna
Chain: M: PDB Molecule:transcription initiation factor tfiid;
PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex
23c2mzzA_



not modelled 11.3 16
PDB header:hydrolase, antiviral protein
Chain: A: PDB Molecule:apolipoprotein b mrna-editing enzyme, catalytic
PDBTitle: nmr structure of apobec3g ntd variant, sntd
24d2gtlo1



not modelled 11.2 27
Fold:Streptavidin-like
Superfamily:Extracellular hemoglobin linker subunit, receptor domain
Family:Extracellular hemoglobin linker subunit, receptor domain
25c2qibA_



not modelled 10.7 13
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
26d1qi9a_



not modelled 10.3 26
Fold:Acid phosphatase/Vanadium-dependent haloperoxidase
Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase
Family:Haloperoxidase (bromoperoxidase)
27c2ymaB_



not modelled 9.9 27
PDB header:carbohydrate binding protein
Chain: B: PDB Molecule:protein os-9 homolog;
PDBTitle: x-ray structure of the yos9 dimerization domain
28c3vowB_



not modelled 9.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
29c5x62A_



not modelled 9.5 70
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of a carnosine n-methyltransferase bound by adohcy
30c5aj3f_



not modelled 9.1 34
PDB header:ribosome
Chain: F: PDB Molecule:mitoribosomal protein bs6m, mrps6;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
31c5tkmA_



not modelled 8.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3b;
PDBTitle: crystal structure of human apobec3b n-terminal domain
32d1gmua2



not modelled 8.3 21
Fold:Ferredoxin-like
Superfamily:Urease metallochaperone UreE, C-terminal domain
Family:Urease metallochaperone UreE, C-terminal domain
33d1smpi_



not modelled 7.5 30
Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Metalloprotease inhibitor
34c3tcqA_



not modelled 6.8 25
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of matrix protein vp40 from ebola virus sudan
35c6dk4A_



not modelled 6.7 12
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni peroxide stress regulator
36d1w7ab4



not modelled 6.4 23
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
37d1u3em2



not modelled 5.8 25
Fold:DNA-binding domain of intron-encoded endonucleases
Superfamily:DNA-binding domain of intron-encoded endonucleases
Family:DNA-binding domain of intron-encoded endonucleases
38c4bs9A_



not modelled 5.7 12
PDB header:isomerase
Chain: A: PDB Molecule:trud;
PDBTitle: structure of the heterocyclase trud
39d2h28a1



not modelled 5.7 29
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
40c4b0aA_



not modelled 5.5 21
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1, linker,
PDBTitle: the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation
41d1tm9a_



not modelled 5.5 89
Fold:Hypothetical protein MG354
Superfamily:Hypothetical protein MG354
Family:Hypothetical protein MG354
42c2kboA_



not modelled 5.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g;
PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g
43c2z8uQ_



not modelled 5.3 24
PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
44c5aa6F_



not modelled 5.3 53
PDB header:oxidoreductase
Chain: F: PDB Molecule:vanadium-dependent bromoperoxidase 2;
PDBTitle: homohexameric structure of the second vanadate-dependent2 bromoperoxidase (anii) from ascophyllum nodosum
45d2ea9a1



not modelled 5.3 22
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
46c3ik5A_



not modelled 5.3 30
PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:protein nef;
PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide (a63-r80)
47c3nb3C_



not modelled 5.2 38
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

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