Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0698_(-)_798836_799447
DateFri Jul 26 01:50:27 BST 2019
Unique Job ID47027e204cd4d9c4
SequenceLGRRGNRRVH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.643 Y:40.658 Z:22.648
Model (left) based on template c2oxtC_
Top template information
PDB header:viral protein
Chain: C: PDB Molecule:nucleoside-2'-o-methyltransferase;
PDBTitle: crystal structure of meaban virus nucleoside-2'-o-2 methyltransferase
Confidence and coverage
Confidence: 16.4% Coverage: 6%
12 residues ( 6% of your sequence) have been modelled with 16.4% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oxtC_



16.4 67
PDB header:viral protein
Chain: C: PDB Molecule:nucleoside-2'-o-methyltransferase;
PDBTitle: crystal structure of meaban virus nucleoside-2'-o-2 methyltransferase
2c3elyA_



15.5 42
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: wesselsbron virus methyltransferase in complex with adohcy
3c3nfgG_



9.7 29
PDB header:transcription
Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5
4c5ccvH_



9.5 58
PDB header:transferase
Chain: H: PDB Molecule:rna-directed rna polymerase ns5;
PDBTitle: crystal structure of full-length ns5 from dengue virus type 3
5d1ed7a_



9.5 42
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
6c4f7oB_



9.3 38
PDB header:hydrolase
Chain: B: PDB Molecule:cop9 signalosome complex subunit 5;
PDBTitle: crystal structure of csn5
7c2j8aA_



9.0 15
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4
PDBTitle: x-ray structure of the n-terminus rrm domain of set1
8c3u2aA_



9.0 58
PDB header:hydrolase
Chain: A: PDB Molecule:ggdef family protein;
PDBTitle: adaptor dependent degradation of a cell-cycle regulator reveals2 diversity in substrate architectures
9d1yuaa1



8.9 50
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
10d1tffa_



8.4 24
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
11c6g4ww_



8.0 44
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s15a;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
12c5wwoB_



7.8 44
PDB header:rna binding protein
Chain: B: PDB Molecule:essential nuclear protein 1;
PDBTitle: crystal structure of enp1
13c5tfrA_



7.7 67
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of zika virus ns5 protein
14c4k6mA_



7.5 58
PDB header:transferase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: crystal structure of the full-length japanese encephalitis virus ns5
15c1yuaA_



7.4 50
PDB header:dna binding protein
Chain: A: PDB Molecule:topoisomerase i;
PDBTitle: c-terminal domain of escherichia coli topoisomerase i
16c5o60b_



7.2 37
PDB header:ribosome
Chain: B: PDB Molecule:5s rrna;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
17c5m8bB_



7.1 33
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-arabinofuranosidase ii;
PDBTitle: crystal structure of alpha-l-arabinofuranosidase from lactobacillus2 brevis
18c1oqeO_



7.0 63
PDB header:immune system
Chain: O: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
19c1oqeR_



7.0 63
PDB header:immune system
Chain: R: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
20c1oqeP_



7.0 63
PDB header:immune system
Chain: P: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
21c1oqeK_



not modelled 7.0 63
PDB header:immune system
Chain: K: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
22d1oqek_



not modelled 7.0 63
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:BAFF receptor-like
23c1oqeM_



not modelled 7.0 63
PDB header:immune system
Chain: M: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
24c1oqeQ_



not modelled 7.0 63
PDB header:immune system
Chain: Q: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
25c1oqeL_



not modelled 7.0 63
PDB header:immune system
Chain: L: PDB Molecule:tumor necrosis factor receptor superfamily member 13c;
PDBTitle: crystal structure of stall-1 with baff-r
26d1u2za_



not modelled 6.5 63
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
27c4wpbD_



not modelled 6.4 70
PDB header:protein binding
Chain: D: PDB Molecule:alpha/beta-vegf-1;
PDBTitle: vascular endothelial growth factor in complex with alpha/beta-vegf-1
28c4d18E_



not modelled 6.4 43
PDB header:signaling protein
Chain: E: PDB Molecule:cop9 signalosome complex subunit 5;
PDBTitle: crystal structure of the cop9 signalosome
29c4wpbC_



not modelled 6.4 70
PDB header:protein binding
Chain: C: PDB Molecule:alpha/beta-vegf-1;
PDBTitle: vascular endothelial growth factor in complex with alpha/beta-vegf-1
30c4v0qA_



not modelled 6.3 42
PDB header:transferase
Chain: A: PDB Molecule:ns5 polymerase;
PDBTitle: dengue virus full length ns5 complexed with sah
31c2lowA_



not modelled 6.2 45
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
32c5cw6A_



not modelled 6.0 27
PDB header:metal binding protein
Chain: A: PDB Molecule:drbrcc36;
PDBTitle: structure of metal dependent enzyme drbrcc36
33c4po6B_



not modelled 6.0 71
PDB header:transferase
Chain: B: PDB Molecule:interferon alpha/beta receptor 1;
PDBTitle: crystal structure of the human tyk2 ferm and sh2 domains with an2 ifnar1 intracellular peptide
34c4iikA_



not modelled 5.8 67
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine monophosphate-protein hydrolase sidd;
PDBTitle: legionella pneumophila effector
35d1n26a1



not modelled 5.7 83
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains

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