Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0701_(rplC)_800812_801465
DateFri Jul 26 01:50:27 BST 2019
Unique Job ID7913027477ab57a3
SequenceMARKGILGTK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.862 Y:64.513 Z:68.323
Model (left) based on template c5o60D_
Top template information
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l3;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
214 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60D_
100.0 88
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l3;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c1vw3C_
100.0 41
PDB header:ribosome
Chain: C: PDB Molecule:54s ribosomal protein l9, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
3c4v19E_
100.0 30
PDB header:ribosome
Chain: E: PDB Molecule:mitoribosomal protein ul3m, mrpl3;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
4d2gycb1
100.0 51
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
5c3j3vD_
100.0 53
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l3;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
6c4wfbB_
100.0 52
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l3;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
7d2zjrb1
100.0 53
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
8c5mlcE_
100.0 43
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l3, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
9c2ftcC_
100.0 33
PDB header:ribosome
Chain: C: PDB Molecule:mitochondrial 39s ribosomal protein l3;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
10d2j01e1
100.0 56
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
11d1vqob1
100.0 35
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Ribosomal protein L3
12c3jywC_
100.0 27
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l3;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
13c3j21C_
100.0 30
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l3p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
14c3u5iB_
100.0 27
PDB header:ribosome
Chain: B: PDB Molecule:60s ribosomal protein l3;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
15c1s1iC_
100.0 27
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l3;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
16c3iz5C_
100.0 26
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
17c4a1aB_
100.0 27
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein l3;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
18c3j39B_
100.0 24
PDB header:ribosome
Chain: B: PDB Molecule:60s ribosomal protein l3;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
19c2zkrb_
100.0 26
PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:rna expansion segment es4;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
20c3zf7f_
100.0 25
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
21c5ancA_
not modelled 100.0 26
PDB header:translation
Chain: A: PDB Molecule:60s ribosomal protein l3;
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
22c3bboF_
not modelled 100.0 42
PDB header:ribosome
Chain: F: PDB Molecule:ribosomal protein l3;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
23d1qfja1
not modelled 33.0 18
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
24c1a8pA_
not modelled 25.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase;
PDBTitle: ferredoxin reductase from azotobacter vinelandii
25c3j21R_
not modelled 23.6 33
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
26d1vqoq1
not modelled 22.7 44
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
27c1a3qA_
not modelled 20.0 15
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52);
PDBTitle: human nf-kappa-b p52 bound to dna
28c4p6vF_
not modelled 19.6 28
PDB header:oxidoreductase
Chain: F: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit f;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
29c2zkrq_
not modelled 18.9 33
PDB header:ribosomal protein/rna
Chain: Q: PDB Molecule:rna expansion segment es31 part ii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
30d1fdra1
not modelled 18.2 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
31c2bruC_
not modelled 17.7 50
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
32d1d4oa_
not modelled 16.7 50
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
33c2l55A_
not modelled 16.3 8
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
34d1pnoa_
not modelled 15.9 67
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
35c1pt9B_
not modelled 15.5 50
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
36c3zf7U_
not modelled 13.8 67
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21e, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
37d1r4ya_
not modelled 13.8 23
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Ribotoxin
38d1de3a_
not modelled 13.7 24
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Ribotoxin
39c3j3bT_
not modelled 13.4 40
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l21;
PDBTitle: structure of the human 60s ribosomal proteins
40d1qcsa1
not modelled 13.3 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
41c1s1iQ_
not modelled 13.2 33
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l21-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
42c5ogxA_
not modelled 13.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450 reductase;
PDBTitle: crystal structure of amycolatopsis cytochrome p450 reductase gcob.
43c3izcU_
not modelled 12.9 30
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
44c4a1aP_
not modelled 12.8 40
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l21;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
45c1le5E_
not modelled 12.5 26
PDB header:transcription/dna
Chain: E: PDB Molecule:nuclear factor nf-kappa-b p65 subunit;
PDBTitle: crystal structure of a nf-kb heterodimer bound to an ifnb-kb
46d2i6va1
not modelled 12.4 20
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:EpsC C-terminal domain-like
47c3iz5U_
not modelled 12.4 40
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
48c4o9uB_
not modelled 12.3 67
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
49c4arpB_
not modelled 12.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:pesticin;
PDBTitle: structure of the inactive pesticin e178a mutant
50c3a98A_
not modelled 12.1 18
PDB header:signaling protein
Chain: A: PDB Molecule:dedicator of cytokinesis protein 2;
PDBTitle: crystal structure of the complex of the interacting regions of dock22 and elmo1
51c2hdeA_
not modelled 12.1 40
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase complex subunit sap18;
PDBTitle: solution structure of human sap18
52c4bg7A_
not modelled 12.0 24
PDB header:replication
Chain: A: PDB Molecule:putative transcriptional coactivator p15;
PDBTitle: bacteriophage t5 homolog of the eukaryotic transcription coactivator2 pc4 implicated in recombination-dependent dna replication
53c1qfjD_
not modelled 11.3 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (flavin reductase);
PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli
54d2do3a1
not modelled 11.3 29
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
55d1a8pa1
not modelled 11.3 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
56c4wqmA_
not modelled 11.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene-4-monooxygenase electron transfer component;
PDBTitle: structure of the toluene 4-monooxygenase nadh oxidoreductase t4mof,2 k270s k271s variant
57c6i52B_
not modelled 11.2 33
PDB header:dna binding protein
Chain: B: PDB Molecule:replication factor a protein 2;
PDBTitle: yeast rpa bound to ssdna
58c4ytlB_
not modelled 11.0 33
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow2-kow3 domain of transcription elongation factor2 spt5.
59c1nfiC_
not modelled 10.8 26
PDB header:complex (transcription reg/ank repeat)
Chain: C: PDB Molecule:nf-kappa-b p65;
PDBTitle: i-kappa-b-alpha/nf-kappa-b complex
60c1zeqX_
not modelled 10.8 8
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
61d1ikna2
not modelled 10.6 27
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
62c1yb2A_
not modelled 10.4 0
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
63d1yb2a1
not modelled 10.4 0
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
64c5ccbB_
not modelled 10.4 31
PDB header:transferase/rna
Chain: B: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase non-catalytic
PDBTitle: crystal structure of human m1a58 methyltransferase in a complex with2 trna3lys and sah
65c1zuyB_
not modelled 10.3 12
PDB header:contractile protein
Chain: B: PDB Molecule:myosin-5 isoform;
PDBTitle: high-resolution structure of yeast myo5 sh3 domain
66c5o60V_
not modelled 10.0 19
PDB header:ribosome
Chain: V: PDB Molecule:50s ribosomal protein l24;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
67d1uwfa1
not modelled 9.7 13
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
68c4b4dA_
not modelled 9.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of fad-containing ferredoxin-nadp reductase from2 xanthomonas axonopodis pv. citri
69d1vqot1
not modelled 9.4 25
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
70c4z89J_
not modelled 9.3 21
PDB header:rim-binding protein
Chain: J: PDB Molecule:rim-binding protein, isoform f;
PDBTitle: sh3-ii of drosophila rim-binding protein bound to a cacophony derived2 peptide
71c1v1cA_
not modelled 8.9 35
PDB header:sh3-domain
Chain: A: PDB Molecule:obscurin;
PDBTitle: solution structure of the sh3 domain of obscurin
72c2kjpA_
not modelled 8.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ylbl;
PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a
73d1opka1
not modelled 8.6 12
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
74c5mmiV_
not modelled 8.6 25
PDB header:ribosome
Chain: V: PDB Molecule:plastid ribosomal protein ul24c;
PDBTitle: structure of the large subunit of the chloroplast ribosome
75c5ergA_
not modelled 8.6 19
PDB header:transferase
Chain: A: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase non-catalytic
PDBTitle: crystal structure of the two-subunit trna m1a58 methyltransferase2 trm6-trm61 in complex with sam
76d2zjrr1
not modelled 8.5 13
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
77c3iz5Y_
not modelled 8.5 19
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
78c3j21U_
not modelled 8.2 25
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l24p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
79d1vlra2
not modelled 8.2 16
Fold:mRNA decapping enzyme DcpS N-terminal domain
Superfamily:mRNA decapping enzyme DcpS N-terminal domain
Family:mRNA decapping enzyme DcpS N-terminal domain
80c1cqxB_
not modelled 8.1 13
PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
81c2i0nA_
not modelled 8.1 9
PDB header:structural protein
Chain: A: PDB Molecule:class vii unconventional myosin;
PDBTitle: structure of dictyostelium discoideum myosin vii sh3 domain2 with adjacent proline rich region
82c4a1cS_
not modelled 8.0 13
PDB header:ribosome
Chain: S: PDB Molecule:rpl26;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
83c4tu3X_
not modelled 8.0 32
PDB header:hydrolase/protein transport
Chain: X: PDB Molecule:phosphoinositide phosphatase sac1;
PDBTitle: crystal structure of yeast sac1/vps74 complex
84c1qgyA_
not modelled 7.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp+ reductase;
PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e)
85c3iuwA_
not modelled 7.5 38
PDB header:rna binding protein
Chain: A: PDB Molecule:activating signal cointegrator;
PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution
86c2lj0A_
not modelled 7.2 29
PDB header:signaling protein
Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1;
PDBTitle: the third sh3 domain of r85fl
87d1ra0a1
not modelled 7.1 26
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Cytosine deaminase
88c3x2dM_
not modelled 7.1 50
PDB header:viral protein/immune system
Chain: M: PDB Molecule:envelope glycoprotein gp1;
PDBTitle: crystal structure of marburg virus gp in complex with the human2 survivor antibody mr78
89d1sm4a1
not modelled 6.9 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
90c1vpzB_
not modelled 6.9 36
PDB header:rna binding protein
Chain: B: PDB Molecule:carbon storage regulator homolog;
PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution
91c4pogC_
not modelled 6.8 33
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
92c5o0xA_
not modelled 6.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative ferric reductase;
PDBTitle: crystal structure of dehydrogenase domain of cylindrospermum stagnale2 nadph-oxidase 5 (nox5)
93c2rqrA_
not modelled 6.7 17
PDB header:protein binding
Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator
PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex
94c4y6tD_
not modelled 6.7 23
PDB header:structural protein
Chain: D: PDB Molecule:coat protein;
PDBTitle: structure of tobacco streak virus coat protein dimer at 2.4 angstroms2 resolution
95c3s88I_
not modelled 6.7 63
PDB header:immune system/viral protein
Chain: I: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
96c1krhA_
not modelled 6.6 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray structure of benzoate dioxygenase reductase
97c2vl6C_
not modelled 6.4 33
PDB header:dna binding protein
Chain: C: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain
98c4g1bB_
not modelled 6.3 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavohemoglobin;
PDBTitle: x-ray structure of yeast flavohemoglobin in complex with econazole
99c5j21C_
not modelled 6.2 20
PDB header:hydrolase
Chain: C: PDB Molecule:bifunctional oligoribonuclease and pap phosphatase nrna;
PDBTitle: structure of bacillus nanornase a (wt)

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