Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0702_(rplD)_801465_802136
DateFri Jul 26 01:50:27 BST 2019
Unique Job IDab2ec221c8c6f28b
SequenceMAAQEQKTLK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:65.893 Y:90.564 Z:41.787
Model (left) based on template c5o60E_
Top template information
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 94%
209 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60E_
100.0 87
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c4v19F_
100.0 28
PDB header:ribosome
Chain: F: PDB Molecule:mitoribosomal protein ul4m, mrpl4;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
3c3j3vE_
100.0 40
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
4c3bboG_
100.0 32
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein l4;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
5c4wf9C_
100.0 43
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l4;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with telithromycin
6c1vw3D_
100.0 23
PDB header:ribosome
Chain: D: PDB Molecule:54s ribosomal protein yml6, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
7c4ce4F_
100.0 28
PDB header:ribosome
Chain: F: PDB Molecule:mrpl4;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
8d2j01f1
100.0 38
Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
9d2gycc1
100.0 36
Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
10d2zjrc1
100.0 35
Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
11c3j21D_
100.0 26
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l4p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
12c5tqbA_
100.0 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:60s ribosomal protein l4-like protein;
PDBTitle: crystal structure of assembly chaperone of ribosomal protein l4 (acl4)2 in complex with ribosomal protein l4 (rpl4)
13c3jywD_
100.0 22
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l4(b);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
14d1vqoc1
100.0 23
Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
15c2zkrc_
100.0 24
PDB header:ribosomal protein/rna
Chain: C: PDB Molecule:rna expansion segment es5;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
16c1s1iD_
100.0 22
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l4-b;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
17c3j39C_
100.0 27
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l4;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
18c4b6aC_
100.0 26
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l4-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
19c2ftcD_
100.0 32
PDB header:ribosome
Chain: D: PDB Molecule:mitochondrial ribosomal protein l4 isoform a;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
20c3iz5D_
100.0 28
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
21c3j3bC_
not modelled 100.0 26
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l4;
PDBTitle: structure of the human 60s ribosomal proteins
22c3zf7r_
not modelled 100.0 21
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l17, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
23c4a1aC_
not modelled 100.0 28
PDB header:ribosome
Chain: C: PDB Molecule:rpl4;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
24d1dmga_
not modelled 100.0 30
Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
25c2d3wB_
not modelled 37.6 8
PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable atp-dependent transporter sufc;
PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery
26c1f2uD_
not modelled 21.9 9
PDB header:replication
Chain: D: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of rad50 abc-atpase
27c6bzrA_
not modelled 17.6 26
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance-associated protein 6;
PDBTitle: human abcc6 nbd2 in adp-bound state
28c2ehjA_
not modelled 17.6 13
PDB header:transferase
Chain: A: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of uracil phosphoribosyl transferase
29d1fsga_
not modelled 17.1 19
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
30c5xjyA_
not modelled 16.8 15
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
31d2pmka1
not modelled 16.4 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
32c5a5uB_
not modelled 15.4 9
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: structure of mammalian eif3 in the context of the 43s preinitiation2 complex
33c5kapA_
not modelled 15.4 24
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: trypanosome brucei hypoxanthine-guanine phosphoribosyltranferase in2 complex with a 9-(4-(phosphonobutil)hypoxanthine
34d2gycj1
not modelled 15.0 39
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
35c6n9lA_
not modelled 13.8 19
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: crystal structure of t. maritima uvra d117-399 with adp
36d1cjba_
not modelled 13.2 19
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
37c5t5dA_
not modelled 13.1 12
PDB header:transport protein
Chain: A: PDB Molecule:pts system, iib component;
PDBTitle: crystal structure of the pts iib protein associated with the fucose2 utilization operon from streptococcus pneumoniae
38c1x37A_
not modelled 12.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: structure of bacillus subtilis lon protease ssd domain
39d1pf4a1
not modelled 12.3 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
40c1gpjA_
not modelled 12.3 16
PDB header:reductase
Chain: A: PDB Molecule:glutamyl-trna reductase;
PDBTitle: glutamyl-trna reductase from methanopyrus kandleri
41c3nvbA_
not modelled 12.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate
42d1tc1a_
not modelled 12.1 22
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
43c4gitA_
not modelled 12.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
44c5xeiA_
not modelled 11.9 17
PDB header:dna binding protein, cell cycle
Chain: A: PDB Molecule:chromosome partition protein smc;
PDBTitle: crystal structure of the smc head domain with a coiled coil and joint2 derived from pyrococcus yayanosii
45c3ozxA_
not modelled 11.6 11
PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
46c3h0gE_
not modelled 11.4 10
PDB header:transcription
Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc1;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
47c5ipfA_
not modelled 11.3 22
PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase (hgprt);
PDBTitle: crystal structure of hypoxanthine-guanine phosphoribosyltransferase2 from schistosoma mansoni in complex with imp
48c3zqjF_
not modelled 11.1 12
PDB header:dna binding protein
Chain: F: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
49d1qzma_
not modelled 10.5 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
50d2hyda1
not modelled 10.4 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
51c2wc1A_
not modelled 9.4 11
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
52c4gu0F_
not modelled 9.4 35
PDB header:oxidoreductase
Chain: F: PDB Molecule:histone h3.3;
PDBTitle: crystal structure of lsd2 with h3
53c4hsuC_
not modelled 9.4 35
PDB header:oxidoreductase
Chain: C: PDB Molecule:histone h3;
PDBTitle: crystal structure of lsd2-npac with h3(1-26)in space group p21
54c4gu0E_
not modelled 9.4 35
PDB header:oxidoreductase
Chain: E: PDB Molecule:histone h3.3;
PDBTitle: crystal structure of lsd2 with h3
55c3j3bq_
not modelled 9.2 14
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
56c4mrnB_
not modelled 8.5 13
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter related protein;
PDBTitle: structure of a bacterial atm1-family abc transporter
57c5idvA_
not modelled 8.5 13
PDB header:transport protein
Chain: A: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: structure of the nucleotide binding domain of an abc transporter msba2 from acinetobacter baumannii
58d1mv5a_
not modelled 8.4 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
59c1xxiF_
not modelled 8.3 13
PDB header:transferase
Chain: F: PDB Molecule:dna polymerase iii, delta subunit;
PDBTitle: adp bound e. coli clamp loader complex
60c2hydB_
not modelled 8.3 15
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
61c5tz8C_
not modelled 8.2 16
PDB header:transferase
Chain: C: PDB Molecule:glycosyl transferase;
PDBTitle: crystal structure of s. aureus tars
62c3if4C_
not modelled 8.0 50
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:integron cassette protein hfx_cass5;
PDBTitle: structure from the mobile metagenome of north west arm sewage outfall:2 integron cassette protein hfx_cass5
63c5vykC_
not modelled 7.8 12
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of brs domain of braf and cc-sam domain of
PDBTitle: crystal structure of the brs domain of braf in complex with the cc-sam2 domain of ksr1
64d3b60a1
not modelled 7.8 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
65d1z7ga1
not modelled 7.4 19
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
66d1uhwa_
not modelled 7.1 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
67c3qf4A_
not modelled 6.9 13
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
68c2kftB_
not modelled 6.8 37
PDB header:transcription/protein binding
Chain: B: PDB Molecule:histone h3;
PDBTitle: nmr solution structure of the first phd finger domain of2 human autoimmune regulator (aire) in complex with histone3 h3(1-20cys) peptide
69c3iz5s_
not modelled 6.7 22
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
70c3izcs_
not modelled 6.7 17
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
71c2vf7B_
not modelled 6.5 17
PDB header:dna binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
72c3kb8A_
not modelled 6.3 26
PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase;
PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp
73c2v3jA_
not modelled 6.1 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:essential for mitotic growth 1;
PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase
74c4pl0B_
not modelled 6.0 11
PDB header:transport protein
Chain: B: PDB Molecule:microcin-j25 export atp-binding/permease protein mcjd;
PDBTitle: crystal structure of the antibacterial peptide abc transporter mcjd in2 an outward occluded state
75d1oeyj_
not modelled 5.8 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
76c5ochF_
not modelled 5.8 17
PDB header:hydrolase
Chain: F: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
77d1v2ya_
not modelled 5.8 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
78c3htrB_
not modelled 5.7 43
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
79c5e38D_
not modelled 5.6 10
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structural basis of mapping the spontaneous mutations with 5-2 flourouracil in uracil phosphoribosyltransferase from mycobacterium3 tuberculosis
80c5mvrA_
not modelled 5.5 15
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
81d2v3ka1
not modelled 5.4 18
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:EMG1/NEP1-like
82d1oxxk2
not modelled 5.4 25
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
83c4fwiB_
not modelled 5.3 13
PDB header:transport protein
Chain: B: PDB Molecule:abc-type dipeptide/oligopeptide/nickel transport system,
PDBTitle: crystal structure of the nucleotide-binding domain of a dipeptide abc2 transporter
84c1pzmB_
not modelled 5.2 20
PDB header:transferase
Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp
85c4u02C_
not modelled 5.2 14
PDB header:transport protein
Chain: C: PDB Molecule:amino acid abc transporter, atp-binding protein;
PDBTitle: crystal structure of apo-ttha1159
86d1y0ja1
not modelled 5.0 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1

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