Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0704_(rplB)_802531_803373
DateFri Jul 26 01:50:27 BST 2019
Unique Job IDff851a001e7cb626
SequenceMAIRKYKPTT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.702 Y:58.155 Z:71.864
Model (left) based on template c5o60C_
Top template information
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 98%
275 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60C_
100.0 93
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c3d5bD_
100.0 63
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
3c3j3wC_
100.0 62
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
4c1vw3B_
100.0 44
PDB header:ribosome
Chain: B: PDB Molecule:54s ribosomal protein rml2, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
5c2z4lC_
100.0 56
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with paromomycin and ribosome recycling factor (rrf). this3 file contains the 50s subunit of the first 70s ribosome, with4 paromomycin and rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400.
6c3bboE_
100.0 54
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein l2;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
7c2gyaA_
100.0 59
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
8c4a1cA_
100.0 31
PDB header:ribosome
Chain: A: PDB Molecule:rpl8;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
9c2zkra_
100.0 33
PDB header:ribosomal protein/rna
Chain: A: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
10c1kqsA_
100.0 40
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
11c3j21B_
100.0 33
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l2p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
12c4v19D_
100.0 40
PDB header:ribosome
Chain: D: PDB Molecule:mitoribosomal protein ul2m, mrpl2;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
13c4ce4D_
100.0 42
PDB header:ribosome
Chain: D: PDB Molecule:mrpl2;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
14c2b66D_
100.0 59
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
15c3zf7e_
100.0 36
PDB header:ribosome
Chain: E: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
16d2j01d1
100.0 62
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
17d2qamc1
100.0 58
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
18d2zjra1
100.0 63
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
19d1vqoa1
100.0 43
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
20c1rl2A_
100.0 62
PDB header:ribosomal protein
Chain: A: PDB Molecule:protein (ribosomal protein l2);
PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus
21c2ftcB_
not modelled 100.0 39
PDB header:ribosome
Chain: B: PDB Molecule:mitochondrial ribosomal protein l2;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
22d2j01d2
not modelled 100.0 66
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
23d2zjra2
not modelled 100.0 66
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
24d1rl2a1
not modelled 100.0 60
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
25d1vqoa2
not modelled 99.9 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
26d1rl2a2
not modelled 99.9 61
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
27d2qamc2
not modelled 99.8 59
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28c3peiA_
not modelled 89.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis
29d2dy1a1
not modelled 73.0 21
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
30c3ij3A_
not modelled 56.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
31c1lanA_
not modelled 53.6 21
PDB header:hydrolase (alpha-aminoacylpeptide)
Chain: A: PDB Molecule:leucine aminopeptidase;
PDBTitle: leucine aminopeptidase complex with l-leucinal
32c3h8gC_
not modelled 46.3 17
PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
33c2jmzA_
not modelled 45.9 17
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein mj0781;
PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
34c1oeiA_
not modelled 45.7 61
PDB header:prion protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: human prion protein 61-84
35d2cqaa1
not modelled 41.3 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
36c4maqB_
not modelled 40.9 26
PDB header:hydrolase
Chain: B: PDB Molecule:putative fumarylpyruvate hydrolase;
PDBTitle: crystal structure of a putative fumarylpyruvate hydrolase from2 burkholderia cenocepacia
37c5ergA_
not modelled 40.8 22
PDB header:transferase
Chain: A: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase non-catalytic
PDBTitle: crystal structure of the two-subunit trna m1a58 methyltransferase2 trm6-trm61 in complex with sam
38c3d4rE_
not modelled 40.2 18
PDB header:unknown function
Chain: E: PDB Molecule:domain of unknown function from the pfam-b_34464 family;
PDBTitle: crystal structure of a duf2118 family protein (mmp0046) from2 methanococcus maripaludis at 2.20 a resolution
39c3kzwD_
not modelled 38.7 21
PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
40c5lhkA_
not modelled 35.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:leucine aminopeptidase 2, chloroplastic;
PDBTitle: bottromycin maturation enzyme botp in complex with mn
41d2bv3a1
not modelled 34.7 28
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
42c3nx6A_
not modelled 31.6 33
PDB header:chaperone
Chain: A: PDB Molecule:10kda chaperonin;
PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331
43c1x65A_
not modelled 30.3 27
PDB header:rna binding protein
Chain: A: PDB Molecule:unr protein;
PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)
44c3jruB_
not modelled 29.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
45c6omeA_
not modelled 27.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of a probable cytosol aminopeptidase (leucine2 aminopeptidase, lap) from chlamydia trachomatis d/uw-3/cx
46c2kkgA_
not modelled 27.7 59
PDB header:membrane protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: nmr structure of the octarepeat region of prion protein2 bound to pentosan polysulfate
47d1lama1
not modelled 27.5 21
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Leucine aminopeptidase, C-terminal domain
48c5ounA_
not modelled 26.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
49c4gopX_
not modelled 25.8 13
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
50c6cxdA_
not modelled 24.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase b;
PDBTitle: crystal structure of peptidase b from yersinia pestis co92 at 2.75 a2 resolution
51c3j20J_
not modelled 24.1 16
PDB header:ribosome
Chain: J: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
52c1gytG_
not modelled 23.6 23
PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
53c5xxuI_
not modelled 23.1 16
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein es8;
PDBTitle: small subunit of toxoplasma gondii ribosome
54c3u5cI_
not modelled 21.8 24
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
55c4zi6D_
not modelled 21.5 25
PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of leucine aminopeptidase from helicobacter pylori
56c3j3aI_
not modelled 20.5 19
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8;
PDBTitle: structure of the human 40s ribosomal proteins
57c4kkuD_
not modelled 20.4 8
PDB header:membrane protein
Chain: D: PDB Molecule:membrane fusion protein;
PDBTitle: structure of besa (selenomethinone derivative - p212121)
58c1gycA_
not modelled 17.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase 2;
PDBTitle: crystal structure determination at room temperature of a laccase from2 trametes versicolor in its oxidised form containing a full complement3 of copper ions
59c6iymB_
not modelled 16.9 33
PDB header:hydrolase
Chain: B: PDB Molecule:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase;
PDBTitle: fumarylacetoacetate hydrolase (eafah) from psychrophilic2 exiguobacterium antarcticum
60d2pi2e1
not modelled 16.4 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
61c2pqaB_
not modelled 16.4 15
PDB header:replication
Chain: B: PDB Molecule:replication protein a 14 kda subunit;
PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
62c3zey5_
not modelled 16.2 19
PDB header:ribosome
Chain: 5: PDB Molecule:40s ribosomal protein s8;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
63c5xyiI_
not modelled 16.0 16
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8;
PDBTitle: small subunit of trichomonas vaginalis ribosome
64c3r6oA_
not modelled 15.6 31
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase;
PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus
65c3j38I_
not modelled 15.4 19
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
66c2dfuB_
not modelled 15.3 31
PDB header:isomerase
Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8
67d1ulva4
not modelled 14.3 16
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
68c5lp5F_
not modelled 13.9 14
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
69c5ntgA_
not modelled 13.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase;
PDBTitle: structure of leucyl aminopeptidase from trypanosoma cruzi in complex2 with citrate
70c2kcoA_
not modelled 13.9 19
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4.
71c3f1zF_
not modelled 13.5 46
PDB header:dna binding protein
Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein;
PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution
72d1sawa_
not modelled 13.0 18
Fold:FAH
Superfamily:FAH
Family:FAH
73c2qqsB_
not modelled 12.8 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
74c2j5uB_
not modelled 12.6 26
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
75c2jz8A_
not modelled 11.3 56
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bh09830;
PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
76d1q1ca2
not modelled 10.9 17
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
77c5ohqA_
not modelled 10.8 15
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: crystal structure of the kow6-kow7 domain of human dsif
78c5daoA_
not modelled 10.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: laccase from antrodiella faginea
79d3d3ra1
not modelled 10.5 21
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
80c2xzn2_
not modelled 10.3 12
PDB header:ribosome
Chain: 2: PDB Molecule:40s ribosomal protein s8;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
81c1wzoC_
not modelled 10.3 26
PDB header:isomerase
Chain: C: PDB Molecule:hpce;
PDBTitle: crystal structure of the hpce from thermus thermophilus hb8
82c4e2uA_
not modelled 10.2 19
PDB header:unknown function
Chain: A: PDB Molecule:pho rada intein;
PDBTitle: crystal structures of radamin intein from pyrococcus horikoshii
83d2nvna1
not modelled 9.8 16
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:PMN2A0962/syc2379c-like
84c6opcZ_
not modelled 9.7 17
PDB header:motor protein
Chain: Z: PDB Molecule:ubx domain-containing protein 1;
PDBTitle: cdc48 hexamer in a complex with substrate and shp1(ubx domain)
85c3d3rA_
not modelled 9.7 21
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
86c3kf8D_
not modelled 9.7 17
PDB header:structural protein
Chain: D: PDB Molecule:protein ten1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
87c4tt9A_
not modelled 9.7 7
PDB header:protein transport
Chain: A: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: structure of the c-terminal spoa domain of shigella flexneri spa33
88d1g03a_
not modelled 9.6 86
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
89c4uc4A_
not modelled 9.4 17
PDB header:replication
Chain: A: PDB Molecule:lysine-specific demethylase 4b;
PDBTitle: crystal structure of hybrid tudor domain of human lysine demethylase2 kdm4b
90d1gtta2
not modelled 9.4 24
Fold:FAH
Superfamily:FAH
Family:FAH
91c2kjpA_
not modelled 9.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ylbl;
PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a
92c2kcyA_
not modelled 9.4 16
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d
93d1o6aa_
not modelled 9.2 7
Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
94c5ifgC_
not modelled 9.2 24
PDB header:hydrolase/antitoxin
Chain: C: PDB Molecule:mrna interferase higb;
PDBTitle: crystal structure of higa-higb complex from e. coli
95c1i7oC_
not modelled 9.2 26
PDB header:isomerase, lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional
PDBTitle: crystal structure of hpce
96d2it9a1
not modelled 9.1 21
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:PMN2A0962/syc2379c-like
97c6cztA_
not modelled 8.9 25
PDB header:cell adhesion
Chain: A: PDB Molecule:alginate biosynthesis protein algf;
PDBTitle: cs-rosetta determined structures of the n-terminal domain of algf from2 p. aeruginosa
98d1gtta1
not modelled 8.8 27
Fold:FAH
Superfamily:FAH
Family:FAH
99c4dbhA_
not modelled 8.3 29
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of cg1458 with inhibitor

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