Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0705_(rpsS)_803414_803695
DateFri Jul 26 01:50:27 BST 2019
Unique Job ID9de509b76f3fe166
SequenceMPRSLKKGPF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.768 Y:37.947 Z:41.428
Model (left) based on template c3bbnS_
Top template information
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s19;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
Confidence and coverage
Confidence:100.0% Coverage: 99%
92 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bbnS_



100.0 62
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s19;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
2c5o5jS_



100.0 98
PDB header:ribosome
Chain: S: PDB Molecule:30s ribosomal protein s19;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
3d2uubs1



100.0 69
Fold:Ribosomal protein S19
Superfamily:Ribosomal protein S19
Family:Ribosomal protein S19
4d2gy9s1



100.0 70
Fold:Ribosomal protein S19
Superfamily:Ribosomal protein S19
Family:Ribosomal protein S19
5c3zeyI_



100.0 23
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
6c5xyiP_



100.0 26
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
7c3j20T_



100.0 40
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
8c2zkqs_



100.0 29
PDB header:ribosomal protein/rna
Chain: S: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
9c2xzmS_



100.0 30
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
10c3j38P_



100.0 30
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
11c3o30I_



100.0 26
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15;
PDBTitle: yeast 80s ribosome. this entry consists of the 40s subunit of the2 second 80s in the asymmetric unit.
12c5xxuP_



100.0 27
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
13c3izbR_



100.0 25
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein rps15 (s19p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
14c1s1hS_



100.0 27
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s15;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
15c5aycA_



14.6 18
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of ruminococcus albus 4-o-beta-d-mannosyl-d-glucose2 phosphorylase (ramp1) in complexes with sulfate and 4-o-beta-d-3 mannosyl-d-glucose
16d1li1c1



14.0 14
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
17c1t60R_



13.6 14
PDB header:structural protein
Chain: R: PDB Molecule:type iv collagen;
PDBTitle: crystal structure of type iv collagen nc1 domain from2 bovine lens capsule
18c5dz7A_



12.9 36
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis protein pkse;
PDBTitle: structural basis of acyl transfer in a trans-at polyketide synthase
19d1nm2a1



12.5 36
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
20c5czcA_



11.9 29
PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: the structure of vink
21c4rr5A_



not modelled 11.8 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: the crystal structure of synechocystis sp. pcc 6803 malonyl-coa: acp2 transacylase
22c2cuyA_



not modelled 11.7 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8
23c5dz6A_



not modelled 11.1 43
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis malonyl coa-acyl carrier protein
PDBTitle: acyl transferase from bacillaene pks
24c3g87A_



not modelled 10.7 50
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease
25c3ezoA_



not modelled 10.7 43
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein s-malonyltransferase from2 burkholderia pseudomallei 1710b
26c5u35A_



not modelled 10.3 32
PDB header:de novo protein
Chain: A: PDB Molecule:de novo ntf2 with large cavity;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
27d1t61a1



not modelled 9.8 21
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
28d1roca_



not modelled 9.8 40
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ASF1-like
Family:ASF1-like
29c3im8A_



not modelled 9.7 29
PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae
30c6fikA_



not modelled 9.6 57
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polyketide synthase;
PDBTitle: acp2 crosslinked to the ks of the loading/condensing region of the2 ctb1 pks
31c3im9A_



not modelled 9.5 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from staphylococcus aureus
32c2jfkD_



not modelled 9.4 50
PDB header:transferase
Chain: D: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the mat domain of human fas with malonyl-coa
33c3tzzA_



not modelled 9.3 36
PDB header:transferase
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: crystal structure of a fragment containing the acyltransferase domain2 of pks13 from mycobacterium tuberculosis in the carboxypalmitoylated3 form at 2.5 a
34c5ypvA_



not modelled 9.1 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of fabd from acinetobacter baumannii
35c4ammA_



not modelled 8.7 43
PDB header:transferase
Chain: A: PDB Molecule:dyne8;
PDBTitle: crystal structure of the acyltransferase domain of the2 iterative polyketide synthase in enediyne biosynthesis3 reveals the molecular basis of substrate specificity
36c3htxA_



not modelled 8.6 36
PDB header:transferase/rna
Chain: A: PDB Molecule:hen1;
PDBTitle: crystal structure of small rna methyltransferase hen1
37c3hhdC_



not modelled 8.5 50
PDB header:transferase, hydrolase
Chain: C: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the human fatty acid synthase ks-mat didomain as a2 framework for inhibitor design.
38d1t3qa2



not modelled 8.5 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
39c3eenA_



not modelled 8.4 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acp transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331
40c2cdh9_



not modelled 8.2 36
PDB header:transferase
Chain: 9: PDB Molecule:acetyl transferase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
41c6iytA_



not modelled 7.7 50
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from second module 142 of salinomycin polyketide synthase
42d2gtlo1



not modelled 7.7 20
Fold:Streptavidin-like
Superfamily:Extracellular hemoglobin linker subunit, receptor domain
Family:Extracellular hemoglobin linker subunit, receptor domain
43c6iyrA_



not modelled 7.5 43
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from module 8 of the2 salinomycin polyketide synthase
44c4qbuA_



not modelled 7.3 29
PDB header:transferase
Chain: A: PDB Molecule:zmaa;
PDBTitle: structure of the acyl transferase domain of zmaa
45c4m1xB_



not modelled 7.3 29
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein 201phi2-1p060;
PDBTitle: tetrameric ring structure of 201phi2-1p060 from pseudomonas phage2 201phi2-1
46c2h1yA_



not modelled 7.2 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori
47c3tqeA_



not modelled 7.2 43
PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii
48c6iyoA_



not modelled 7.0 43
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from the second module2 of the salinomycin polyketide synthase
49c4mz0B_



not modelled 6.9 29
PDB header:transferase
Chain: B: PDB Molecule:curl;
PDBTitle: structure of a ketosynthase-acyltransferase di-domain from module curl2 of the curacin a polyketide synthase
50d1mlaa1



not modelled 6.6 60
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
51c3rgiA_



not modelled 6.4 43
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
52d1t61c1



not modelled 6.3 14
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
53d1vlba2



not modelled 6.3 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
54c3ptwA_



not modelled 6.3 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124
55c2idcA_



not modelled 6.1 40
PDB header:replication/chaperone
Chain: A: PDB Molecule:anti-silencing protein 1 and histone h3 chimera;
PDBTitle: structure of the histone h3-asf1 chaperone interaction
56d1td6a_



not modelled 6.1 31
Fold:Hypothetical protein MPN330
Superfamily:Hypothetical protein MPN330
Family:Hypothetical protein MPN330
57d1ex4a1



not modelled 6.0 63
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
58c3qatB_



not modelled 5.8 50
PDB header:transferase
Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae
59d1quba5



not modelled 5.8 16
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
60c2qo3A_



not modelled 5.7 50
PDB header:transferase
Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4;
PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase
61c1c6vX_



not modelled 5.7 50
PDB header:dna binding protein
Chain: X: PDB Molecule:protein (siu89134);
PDBTitle: siv integrase (catalytic domain + dna biding domain comprising2 residues 50-293) mutant with phe 185 replaced by his (f185h)
62d1c6vx_



not modelled 5.7 50
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
63c3pntD_



not modelled 5.7 50
PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:immunity factor for spn;
PDBTitle: crystal structure of the streptococcus pyogenes nad+ glycohydrolase2 spn in complex with ifs, the immunity factor for spn
64d1c1za5



not modelled 5.4 16
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
65c6c9uA_



not modelled 5.4 50
PDB header:transferase/immune system
Chain: A: PDB Molecule:6-deoxyerythronolide-b synthase erya2, modules 3 and 4;
PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase in complex with antibody fragment (fab)
66c4rl1A_



not modelled 5.3 60
PDB header:transferase
Chain: A: PDB Molecule:type i polyketide synthase aves 1;
PDBTitle: structural and functional analysis of a loading acyltransferase from2 the avermectin modular polyketide synthase
67d2i32a1



not modelled 5.2 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ASF1-like
Family:ASF1-like
68c2i32A_



not modelled 5.2 35
PDB header:replication chaperone
Chain: A: PDB Molecule:anti-silencing factor 1 paralog a;
PDBTitle: structure of a human asf1a-hira complex and insights into specificity2 of histone chaperone complex assembly
69d1s6la2



not modelled 5.2 32
Fold:NosL/MerB-like
Superfamily:NosL/MerB-like
Family:MerB-like
70c1t60W_



not modelled 5.2 21
PDB header:structural protein
Chain: W: PDB Molecule:type iv collagen;
PDBTitle: crystal structure of type iv collagen nc1 domain from2 bovine lens capsule

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