Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0706_(rplV)_803692_804285
DateFri Jul 26 01:50:27 BST 2019
Unique Job IDa850578317b374ee
SequenceMTAATKATEY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.391 Y:36.714 Z:38.942
Model (left) based on template c5o60T_
Top template information
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l22;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 57%
113 residues ( 57% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60T_
100.0 88
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l22;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2d2zjrp1
100.0 50
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
3c4v19W_
100.0 21
PDB header:ribosome
Chain: W: PDB Molecule:mitoribosomal protein ul22m, mrpl22;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
4c5mlcU_
100.0 34
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l22, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
5c1vw4O_
100.0 21
PDB header:ribosome
Chain: O: PDB Molecule:54s ribosomal protein l22, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
6c3j3wS_
100.0 51
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
7c4ce4W_
100.0 23
PDB header:ribosome
Chain: W: PDB Molecule:mrpl22;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
8d1i4ja_
100.0 50
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
9c3bboU_
100.0 39
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l22;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
10d1vqor1
100.0 23
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
11c3u5eP_
100.0 30
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
12c3iz5V_
100.0 27
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
13c3j39P_
100.0 22
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
14c4a17Q_
100.0 22
PDB header:ribosome
Chain: Q: PDB Molecule:rpl17;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
15c3zf7R_
100.0 27
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l17, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
16c2ftcM_
100.0 24
PDB header:ribosome
Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
17c3j21S_
100.0 38
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
18c3jywN_
100.0 33
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
19c2zkrr_
100.0 23
PDB header:ribosomal protein/rna
Chain: R: PDB Molecule:rna expansion segment es39 part i;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
20d2gycq1
100.0 54
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
21c1s1iN_
not modelled 100.0 34
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
22d1r9pa_
not modelled 85.7 24
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
23c2z7eB_
not modelled 78.0 13
PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster
24d1wfza_
not modelled 74.3 23
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
25c4eb5C_
not modelled 66.8 26
PDB header:transferase/metal binding protein
Chain: C: PDB Molecule:nifu protein (nifu-1);
PDBTitle: a. fulgidus iscs-iscu complex structure
26c5uftA_
not modelled 66.3 16
PDB header:metal binding protein
Chain: A: PDB Molecule:nitrogen-fixing nifu-like, n-terminal;
PDBTitle: crystal structure of a nitrogen-fixing nifu-like protein (n-terminal)2 from brucella abortus
27d1xjsa_
not modelled 40.2 17
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
28d1fs1b1
not modelled 31.1 13
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
29c3ka5A_
not modelled 28.1 13
PDB header:chaperone
Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1);
PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
30d2ouxa1
not modelled 24.1 14
Fold:alpha-alpha superhelix
Superfamily:MgtE N-terminal domain-like
Family:MgtE N-terminal domain-like
31c2i88A_
not modelled 22.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
32c1rh1A_
not modelled 22.2 19
PDB header:antibiotic
Chain: A: PDB Molecule:colicin b;
PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
33c3lyvF_
not modelled 22.1 13
PDB header:chaperone
Chain: F: PDB Molecule:ribosome-associated factor y;
PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a
34c3k2tA_
not modelled 21.7 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
35d1dwka1
not modelled 21.4 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
36d1ciia1
not modelled 19.5 20
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
37c3fewX_
not modelled 19.3 27
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
38d2crna1
not modelled 17.3 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
39c2crnA_
not modelled 16.4 14
PDB header:immune system
Chain: A: PDB Molecule:ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
40c2cpwA_
not modelled 16.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant;
PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna
41d1whca_
not modelled 15.8 14
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
42c1a87A_
not modelled 14.7 25
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
43d1a87a_
not modelled 14.7 25
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
44d1su0b_
not modelled 14.0 21
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
45c2qq4A_
not modelled 13.9 33
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis protein iscu2 (ttha1736) from thermus thermophilus hb8
46c5z08A_
not modelled 13.5 18
PDB header:cell cycle
Chain: A: PDB Molecule:cenp-i;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
47d1pyya2
not modelled 13.0 19
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
48d1cola_
not modelled 12.4 25
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
49d1rp5a2
not modelled 12.1 19
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
50c2zqeA_
not modelled 11.8 36
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
51d1rh1a2
not modelled 11.4 20
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
52d1r4va_
not modelled 11.3 28
Fold:Histone-fold
Superfamily:Histone-fold
Family:Bacterial histone-fold protein
53d1fs2b1
not modelled 11.0 10
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
54d1k25a2
not modelled 10.4 19
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
55d2ovra1
not modelled 8.9 10
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
56c3ouvA_
not modelled 8.8 29
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase;
PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb
57d1nexa1
not modelled 8.7 25
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
58d1v95a_
not modelled 8.3 23
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
59c2p1nD_
not modelled 8.0 20
PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
60c4qmfB_
not modelled 7.5 33
PDB header:rna binding protein
Chain: B: PDB Molecule:krr1 small subunit processome component;
PDBTitle: structure of the krr1 and faf1 complex from saccharomyces cerevisiae
61c5ipmF_
not modelled 7.5 18
PDB header:transcription, transferase/dna/rna
Chain: F: PDB Molecule:rna polymerase sigma factor rpos;
PDBTitle: sigmas-transcription initiation complex with 4-nt nascent rna
62c4ochA_
not modelled 7.5 50
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease muts2;
PDBTitle: apo structure of smr domain of muts2 from deinococcus radiodurans
63d1myla_
not modelled 6.4 53
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
64d2yvxa1
not modelled 5.8 14
Fold:alpha-alpha superhelix
Superfamily:MgtE N-terminal domain-like
Family:MgtE N-terminal domain-like
65d1wwia1
not modelled 5.5 33
Fold:Histone-fold
Superfamily:Histone-fold
Family:Bacterial histone-fold protein
66c2w1oA_
not modelled 5.3 28
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
67c2qdoC_
not modelled 5.2 23
PDB header:photosynthesis
Chain: C: PDB Molecule:nbla protein;
PDBTitle: nbla protein from t. vulcanus
68d1b28a_
not modelled 5.2 53
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors

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