Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0707_(rpsC)_804285_805109
DateFri Jul 26 01:50:28 BST 2019
Unique Job IDb83cde38f49c8d10
SequenceVGQKINPHGF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.729 Y:52.361 Z:50.337
Model (left) based on template c5o5jC_
Top template information
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 76%
208 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jC_
100.0 97
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2c3j00C_
100.0 50
PDB header:ribosome/ribosomal protein
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: structure of the ribosome-secye complex in the membrane environment
3c2qbfC_
100.0 54
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with ribosome recycling factor (rrf). this file contains the3 30s subunit of the second 70s ribosome. the entire crystal structure4 contains two 70s ribosomes and is described in remark 400.
4c1pnxC_
100.0 56
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: crystal structure of the wild type ribosome from e. coli, 30s subunit2 of 70s ribosome. this file, 1pnx, contains only molecules of the 30s3 ribosomal subunit. the 50s subunit is in the pdb file 1pny.
5c1hnwC_
100.0 56
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline
6c2gy9C_
100.0 54
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal subunit protein s3;
PDBTitle: structure of the 30s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
7c3bbnC_
100.0 40
PDB header:ribosome
Chain: C: PDB Molecule:ribosomal protein s3;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
8c2xznC_
100.0 23
PDB header:ribosome
Chain: C: PDB Molecule:kh domain containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
9c2zkqc_
100.0 22
PDB header:ribosomal protein/rna
Chain: C: PDB Molecule:rna expansion segment es4;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
10c3j20C_
100.0 31
PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
11c3zeyX_
100.0 22
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s3, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
12c5xyiD_
100.0 19
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
13c1s1hC_
100.0 21
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s3;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
14c3izbB_
100.0 21
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
15d2uubc2
100.0 53
Fold:Ribosomal protein S3 C-terminal domain
Superfamily:Ribosomal protein S3 C-terminal domain
Family:Ribosomal protein S3 C-terminal domain
16d2qalc2
100.0 64
Fold:Ribosomal protein S3 C-terminal domain
Superfamily:Ribosomal protein S3 C-terminal domain
Family:Ribosomal protein S3 C-terminal domain
17d2qalc1
100.0 42
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
18d2uubc1
100.0 57
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
19d1wh9a_
99.5 25
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
20c3gkuB_
95.4 23
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
21c2pt7G_
not modelled 93.9 15
PDB header:hydrolase/protein binding
Chain: G: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451)
22c3j6vV_
not modelled 92.4 13
PDB header:ribosome
Chain: V: PDB Molecule:28s ribosomal protein s24, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
23c2cy1A_
not modelled 79.6 24
PDB header:transcription
Chain: A: PDB Molecule:nusa protein homolog;
PDBTitle: crystal structure of ape1850
24d1egaa2
not modelled 77.5 21
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
25c1egaB_
not modelled 75.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
26d1wf3a2
not modelled 72.2 21
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
27d2asba3
not modelled 65.2 23
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
28d1hh2p3
not modelled 64.7 23
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
29c3af5A_
not modelled 63.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ph1404;
PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii
30c3ievA_
not modelled 57.7 25
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
31c1wf3A_
not modelled 57.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
32c2xr1A_
not modelled 46.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
33c2hh2A_
not modelled 45.7 33
PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the fourth kh domain of ksrp
34d2axya1
not modelled 41.4 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
35c4b8tA_
not modelled 41.0 33
PDB header:transcription/rna
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: rna binding protein solution structure of the third kh2 domain of ksrp in complex with the g-rich target sequence.
36c2hh3A_
not modelled 38.3 32
PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the third kh domain of ksrp
37d1we8a_
not modelled 37.8 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
38c2asbA_
not modelled 36.9 23
PDB header:transcription/rna
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex
39d1dt4a_
not modelled 36.9 15
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
40d1tuaa1
not modelled 36.1 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
41d1zzka1
not modelled 35.9 30
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
42c1ztgD_
not modelled 33.9 18
PDB header:dna, rna binding protein/dna
Chain: D: PDB Molecule:poly(rc)-binding protein 1;
PDBTitle: human alpha polyc binding protein kh1
43d1j4wa1
not modelled 33.5 37
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
44d1j4wa2
not modelled 33.0 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
45d1dtja_
not modelled 31.6 15
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
46c6qeyA_
not modelled 30.4 26
PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna-binding protein 1;
PDBTitle: imp1 kh1 and kh2 domains create a structural platform with unique rna2 recognition and re-modelling properties
47c2anrA_
not modelled 30.3 22
PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:neuro-oncological ventral antigen 1;
PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin
48c3krmB_
not modelled 28.7 26
PDB header:rna binding protein
Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein 1;
PDBTitle: imp1 kh34
49d1wvna1
not modelled 28.6 30
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
50d1khma_
not modelled 28.0 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
51d1ec6a_
not modelled 27.3 15
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
52c1j4wA_
not modelled 25.3 41
PDB header:transcription/dna
Chain: A: PDB Molecule:fuse binding protein;
PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene
53c2n8lA_
not modelled 23.4 26
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna-binding protein 1;
PDBTitle: zipcode-binding-protein-1 kh3kh4(dd) domains in complex with the kh32 rna target
54d1x4na1
not modelled 23.1 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
55c4e0eB_
not modelled 22.5 54
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a duf4450 family protein (bt_4147) from2 bacteroides thetaiotaomicron vpi-5482 at 2.90 a resolution
56d1x4ma1
not modelled 22.3 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
57c2yqrA_
not modelled 21.9 21
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
58d2ba0a3
not modelled 21.7 28
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
59c4mtnA_
not modelled 21.7 19
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription termination factor nusa;
PDBTitle: crystal structure of transcription termination factor nusa from2 planctomyces limnophilus dsm 3776
60d1viga_
not modelled 21.5 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
61c1tuaA_
not modelled 21.2 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0754;
PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix
62c2jzxA_
not modelled 21.1 26
PDB header:rna binding protein
Chain: A: PDB Molecule:poly(rc)-binding protein 2;
PDBTitle: pcbp2 kh1-kh2 domains
63c2ycbA_
not modelled 20.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor;
PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus
64c5lm7A_
not modelled 20.5 11
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: crystal structure of the lambda n-nus factor complex
65d2ctja1
not modelled 20.3 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
66d1myna_
not modelled 20.0 42
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Insect defensins
67c2dgrA_
not modelled 19.5 26
PDB header:rna binding protein
Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1;
PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1
68d2ctla1
not modelled 19.3 26
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
69c1k0rB_
not modelled 19.0 23
PDB header:transcription
Chain: B: PDB Molecule:nusa;
PDBTitle: crystal structure of mycobacterium tuberculosis nusa
70c1hh2P_
not modelled 18.3 23
PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
71c2jvzA_
not modelled 18.2 24
PDB header:splicing
Chain: A: PDB Molecule:far upstream element-binding protein 2;
PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp
72c3e04A_
not modelled 18.2 50
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
73c5wwwA_
not modelled 16.9 29
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding e3 ubiquitin-protein ligase mex3c;
PDBTitle: crystal structure of the kh1 domain of human rna-binding e3 ubiquitin-2 protein ligase mex-3c complex with rna
74d2fmra_
not modelled 16.6 31
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
75d1hsta_
not modelled 16.0 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
76d2ctea1
not modelled 15.9 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
77c6flqF_
not modelled 15.6 11
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryoem structure of e.coli rna polymerase paused elongation complex2 bound to nusa
78c1l2fA_
not modelled 14.1 23
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain
79d2ctka1
not modelled 13.4 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
80d2ctma1
not modelled 13.3 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
81c2fenA_
not modelled 11.5 50
PDB header:isomerase
Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme;
PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2
82d1b33n_
not modelled 11.5 14
Fold:Allophycocyanin linker chain (domain)
Superfamily:Allophycocyanin linker chain (domain)
Family:Allophycocyanin linker chain (domain)
83d2cmea1
not modelled 11.3 42
Fold:SARS ORF9b-like
Superfamily:'SARS ORF9b-like
Family:SARS ORF9b-like
84d2ctfa1
not modelled 11.3 19
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
85d1tuaa2
not modelled 10.9 29
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
86d2gysa1
not modelled 10.4 40
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
87d2cpqa1
not modelled 10.2 31
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
88d2z0sa2
not modelled 9.7 21
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
89c4hgvC_
not modelled 9.1 38
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
90c2e3uA_
not modelled 9.0 35
PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein ph1566;
PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3
91c6emlp_
not modelled 9.0 8
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: cryo-em structure of a late pre-40s ribosomal subunit from2 saccharomyces cerevisiae
92c4jvhA_
not modelled 8.9 17
PDB header:rna binding protein
Chain: A: PDB Molecule:protein quaking;
PDBTitle: structure of the star domain of quaking protein in complex with rna
93c3n89B_
not modelled 8.6 20
PDB header:cell cycle
Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a;
PDBTitle: kh domains
94c2pfmA_
not modelled 8.1 38
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis
95c5vkwB_
not modelled 8.1 38
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase ade13 from candida2 albicans
96c3gtdB_
not modelled 8.1 38
PDB header:lyase
Chain: B: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
97c5xnzA_
not modelled 7.8 38
PDB header:lyase
Chain: A: PDB Molecule:cred;
PDBTitle: crystal structure of cred complex with fumarate
98d1c3ca_
not modelled 7.7 43
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
99c2w2rA_
not modelled 7.7 5
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the vesicular stomatitis virus matrix protein

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