Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0708_(rplP)_805113_805529
DateFri Jul 26 01:50:28 BST 2019
Unique Job ID66331faf7b354197
SequenceMLIPRKVKHR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.384 Y:37.123 Z:54.090
Model (left) based on template c5o60N_
Top template information
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l16;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
136 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60N_



100.0 93
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l16;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c4wceJ_



100.0 57
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l16;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus
3c3bboO_



100.0 53
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein l16;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
4d2j01q1



100.0 55
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
5c1vw4K_



100.0 31
PDB header:ribosome
Chain: K: PDB Molecule:54s ribosomal protein l16, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
6d2zjrj1



100.0 53
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
7d2gyck1



100.0 48
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L16p
8c4ce4Q_



100.0 31
PDB header:ribosome
Chain: Q: PDB Molecule:mrpl16;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
9c4v19Q_



100.0 32
PDB header:ribosome
Chain: Q: PDB Molecule:mitoribosomal protein ul16m, mrpl16;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
10c2ftcI_



100.0 33
PDB header:ribosome
Chain: I: PDB Molecule:mitochondrial ribosomal protein l16;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
11c2zkrh_



100.0 23
PDB header:ribosomal protein/rna
Chain: H: PDB Molecule:rna expansion segment es12;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
12c3j21N_



100.0 21
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
13d1jj2h_



100.0 19
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
14d1ffkf_



100.0 17
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
15d1vqoh1



100.0 20
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
16c1s1iI_



100.0 22
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
17c4a1aH_



100.0 27
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l10;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
18c4b6aI_



100.0 22
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
19c3iz5I_



100.0 30
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
20c3izcI_



99.9 26
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
21c3zf7K_



not modelled 99.9 26
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l10, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
22c3j39I_



not modelled 99.9 22
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
23d2pa2a1



not modelled 99.8 28
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
24d2f0aa1



not modelled 53.0 18
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
25c2q9vA_



not modelled 50.3 6
PDB header:transferase
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: crystal structure of the c890s mutant of the 4th pdz domain of human2 membrane associated guanylate kinase
26c2lobA_



not modelled 47.9 13
PDB header:peptide binding protein
Chain: A: PDB Molecule:golgi-associated pdz and coiled-coil motif-containing
PDBTitle: pdz domain of cal (cystic fibrosis transmembrane regulator-associated2 ligand)
27d1x45a1



not modelled 42.7 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
28c1x45A_



not modelled 36.2 11
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:amyloid beta (a4) precursor protein-binding,
PDBTitle: solution structure of the first pdz domain of amyloid beta2 a4 precursor protein-binding family a, member 1
29d1v6ba_



not modelled 32.8 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
30d1i16a_



not modelled 32.6 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:Interleukin 16
31d1rzxa_



not modelled 31.9 9
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
32c2i04B_



not modelled 31.5 7
PDB header:peptide binding protein
Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6
33c2ogpA_



not modelled 30.4 14
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: solution structure of the second pdz domain of par-3
34c6irdC_



not modelled 29.8 9
PDB header:hydrolase/protein binding
Chain: C: PDB Molecule:inad-like protein;
PDBTitle: complex structure of inadl pdz89 and plcb4 c-terminal cc-pbm
35c2yt7A_



not modelled 29.5 15
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3
36d1uepa_



not modelled 29.5 8
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
37c2komA_



not modelled 29.4 12
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning defective 3 homolog;
PDBTitle: solution structure of humar par-3b pdz2 (residues 451-549)
38c1z87A_



not modelled 29.4 14
PDB header:protein binding
Chain: A: PDB Molecule:alpha-1-syntrophin;
PDBTitle: solution structure of the split ph-pdz supramodule of alpha-2 syntrophin
39c5oakA_



not modelled 29.0 18
PDB header:protein binding
Chain: A: PDB Molecule:bazooka, isoform c,ld29223p;
PDBTitle: structure of the dmpar3 pdz1 domain in complex with the dmpar6 pbm
40d1kwaa_



not modelled 26.7 14
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
41c3cyyA_



not modelled 26.2 18
PDB header:peptide binding protein
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide
42d1ry4a_



not modelled 25.3 9
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
43c1u38A_



not modelled 25.2 11
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding,
PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
44d2byga1



not modelled 24.6 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
45d1ihja_



not modelled 24.5 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
46d1wf8a1



not modelled 23.7 13
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
47d1wi4a1



not modelled 23.5 21
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
48c5wouA_



not modelled 23.4 16
PDB header:cell adhesion
Chain: A: PDB Molecule:protein lap4;
PDBTitle: crystal structure of drosophila melanogaster scribble pdz1 domain in2 complex with guk-holder
49c1p1eA_



not modelled 22.9 13
PDB header:protein binding
Chain: A: PDB Molecule:glutamate receptor interacting protein;
PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins
50d1vq3a_



not modelled 22.8 21
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
51d1nf3c_



not modelled 22.6 10
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
52d1vb7a_



not modelled 22.6 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
53d1ozia_



not modelled 22.4 7
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
54c2ehrA_



not modelled 21.7 21
PDB header:structural protein
Chain: A: PDB Molecule:inad-like protein;
PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein
55c4wyuA_



not modelled 21.7 18
PDB header:structural protein/peptide
Chain: A: PDB Molecule:protein scribble homolog;
PDBTitle: crystal structure of scribble pdz34 tandem in complex with its target2 peptide
56d1gtda_



not modelled 21.5 10
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
57c2fneB_



not modelled 21.4 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:multiple pdz domain protein;
PDBTitle: the crystal structure of the 13th pdz domain of mpdz
58c2jreA_



not modelled 21.0 12
PDB header:de novo protein
Chain: A: PDB Molecule:c60-1 pdz domain peptide;
PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis
59c2gzvA_



not modelled 21.0 9
PDB header:signaling protein
Chain: A: PDB Molecule:prkca-binding protein;
PDBTitle: the cystal structure of the pdz domain of human pick1
60d1p1da2



not modelled 21.0 20
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
61c2dmzA_



not modelled 20.9 9
PDB header:protein binding
Chain: A: PDB Molecule:inad-like protein;
PDBTitle: solution structure of the third pdz domain of human inad-2 like protein
62c5gljB_



not modelled 20.5 23
PDB header:hydrolase
Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type 13;
PDBTitle: crystal structure of pdz1 domain of human protein tyrosine phosphatase2 ptp-bas
63c3b76A_



not modelled 20.3 19
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx;
PDBTitle: crystal structure of the third pdz domain of human ligand-of-numb2 protein-x (lnx1) in complex with the c-terminal peptide from the3 coxsackievirus and adenovirus receptor
64d1wg6a_



not modelled 20.3 10
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
65d1qava_



not modelled 20.3 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
66c2xkxB_



not modelled 19.8 14
PDB header:structural protein
Chain: B: PDB Molecule:disks large homolog 4;
PDBTitle: single particle analysis of psd-95 in negative stain
67c2dc2A_



not modelled 19.6 11
PDB header:structural protein
Chain: A: PDB Molecule:golgi associated pdz and coiled-coil motif
PDBTitle: solution structure of pdz domain
68d2fcfa1



not modelled 19.5 20
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
69c2iwqA_



not modelled 18.9 20
PDB header:signaling protein
Chain: A: PDB Molecule:multiple pdz domain protein;
PDBTitle: 7th pdz domain of multiple pdz domain protein mpdz
70c2osgB_



not modelled 18.8 14
PDB header:cell adhesion
Chain: B: PDB Molecule:tight junction protein zo-2;
PDBTitle: solution structure and binding property of the domain-2 swapped dimer of zo2pdz2
71c3vqgA_



not modelled 18.6 5
PDB header:peptide binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx;
PDBTitle: crystal structure analysis of the pdz domain derived from the tight2 junction regulating protein
72d1p1da1



not modelled 18.3 13
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
73c1u37A_



not modelled 18.3 11
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding,
PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
74c3l4fD_



not modelled 18.1 19
PDB header:signaling protein/protein binding
Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein 1;
PDBTitle: crystal structure of betapix coiled-coil domain and shank pdz complex
75d1wjla_



not modelled 18.1 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
76d1rgwa_



not modelled 18.1 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
77d1uewa_



not modelled 17.9 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
78d2cssa1



not modelled 17.7 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
79c2k1zA_



not modelled 17.6 13
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: solution structure of par-3 pdz3
80d1wkca_



not modelled 17.4 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
81c2iwnA_



not modelled 17.4 9
PDB header:signaling protein
Chain: A: PDB Molecule:multiple pdz domain protein;
PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target)
82d1whaa_



not modelled 17.1 14
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
83c2edpA_



not modelled 16.9 16
PDB header:structural protein
Chain: A: PDB Molecule:shroom family member 4;
PDBTitle: solution structure of the pdz domain from human shroom2 family member 4
84d1wfva_



not modelled 16.9 9
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
85d1qlca_



not modelled 16.9 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
86c5zdsA_



not modelled 16.8 14
PDB header:signaling protein
Chain: A: PDB Molecule:ferm and pdz domain-containing 2;
PDBTitle: crystal structure of the second pdz domain of frmpd2
87c3eggC_



not modelled 16.6 16
PDB header:hydrolase
Chain: C: PDB Molecule:spinophilin;
PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
88c2jcbA_



not modelled 16.3 33
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein;
PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489)
89c2enoA_



not modelled 16.1 7
PDB header:endocytosis
Chain: A: PDB Molecule:synaptojanin-2-binding protein;
PDBTitle: solution structure of the pdz domain from human2 synaptojanin 2 binding protein
90c2vwrA_



not modelled 16.1 7
PDB header:protein binding
Chain: A: PDB Molecule:ligand of numb protein x 2;
PDBTitle: crystal structure of the second pdz domain of numb-binding protein 2
91d1uhpa_



not modelled 16.0 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
92c2edvA_



not modelled 15.5 19
PDB header:protein binding
Chain: A: PDB Molecule:ferm and pdz domain-containing protein 1;
PDBTitle: solution structure of the pdz domain from human ferm and2 pdz domain containing 1
93c2jikB_



not modelled 15.4 7
PDB header:membrane protein
Chain: B: PDB Molecule:synaptojanin-2 binding protein;
PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein
94c3hpmA_



not modelled 15.1 9
PDB header:protein binding
Chain: A: PDB Molecule:prkca-binding protein,9-mer peptide of the glur2 subunit;
PDBTitle: oxidized dimeric pick1 pdz c46g mutant in complex with the carboxyl2 tail peptide of glur2
95d1qpoa2



not modelled 15.0 36
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
96c2dkrA_



not modelled 15.0 18
PDB header:protein transport
Chain: A: PDB Molecule:lin-7 homolog b;
PDBTitle: solution structure of the pdz domain from human lin-72 homolog b
97c2p3wB_



not modelled 15.0 5
PDB header:protein binding
Chain: B: PDB Molecule:probable serine protease htra3;
PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)
98d1um7a_



not modelled 15.0 26
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
99d2fnea1



not modelled 14.8 14
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain

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