Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0709_(rpmC)_805529_805762
DateFri Jul 26 01:50:28 BST 2019
Unique Job ID5808d7afd6369f51
SequenceMAVGVSPGEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.542 Y:33.140 Z:37.648
Model (left) based on template c5o60Z_
Top template information
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l29;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence: 99.9% Coverage: 83%
64 residues ( 83% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60Z_
99.9 88
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l29;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c3izrc_
99.9 29
PDB header:ribosome
Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
3c3j21W_
99.9 31
PDB header:ribosome
Chain: W: PDB Molecule:50s ribosomal protein l29p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
4d1r73a_
99.9 50
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
5d2zjrv1
99.9 37
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
6d2hgq11
99.9 42
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
7c2j375_
99.9 32
PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein l35;
PDBTitle: model of mammalian srp bound to 80s rncs
8d1vqov1
99.9 37
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
9c3bboZ_
99.8 34
PDB header:ribosome
Chain: Z: PDB Molecule:ribosomal protein l29;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
10c3j3wX_
99.8 56
PDB header:ribosome
Chain: X: PDB Molecule:50s ribosomal protein l29;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
11c3jywX_
99.8 32
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l35;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
12c2zkrv_
99.8 36
PDB header:ribosomal protein/rna
Chain: V: PDB Molecule:rna expansion segment es9 part2;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
13d2gycw1
99.8 43
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
14c5mlcZ_
99.8 37
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l29, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
15c1s1iX_
99.8 38
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l35;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
16c3j39h_
99.7 32
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
17c3j3bh_
99.7 28
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the human 60s ribosomal proteins
18c4a1eU_
99.7 28
PDB header:ribosome
Chain: U: PDB Molecule:rpl35;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
19c3u5eh_
99.6 30
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
20d2j0121
99.1 45
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
21c4ce42_
not modelled 99.0 23
PDB header:ribosome
Chain: 2: PDB Molecule:mrpl47;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
22c4v192_
not modelled 98.9 23
PDB header:ribosome
Chain: 2: PDB Molecule:mitoribosomal protein ul29m, mrpl47;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
23c1vw4T_
not modelled 98.7 22
PDB header:ribosome
Chain: T: PDB Molecule:54s ribosomal protein l4, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
24c3zf7k_
not modelled 97.2 38
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l10, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
25c4uzxA_
not modelled 45.8 19
PDB header:rna binding protein
Chain: A: PDB Molecule:protein tho1;
PDBTitle: high-resolution nmr structures of the domains of saccharomyces2 cerevisiae tho1
26c2o1sC_
not modelled 40.9 33
PDB header:transferase
Chain: C: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 escherichia coli
27c6ouwA_
not modelled 35.6 26
PDB header:transferase
Chain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxps) from deinococcus2 radiodurans with enamine intermediate bound
28c2o1xA_
not modelled 27.5 26
PDB header:transferase
Chain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from deinococcus2 radiodurans
29c2hv8D_
not modelled 26.2 26
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
30c3j38P_
not modelled 22.1 26
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
31d1gjja2
not modelled 21.1 38
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
32c4y66D_
not modelled 19.8 15
PDB header:cell cycle
Chain: D: PDB Molecule:putative tbpip family protein;
PDBTitle: crystal structure of giardia lamblia hop2-mnd1 complex
33c5i0qA_
not modelled 18.4 45
PDB header:immune system
Chain: A: PDB Molecule:m protein, serotype 2.1;
PDBTitle: structure of human c4b-binding protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of mutant group a3 streptococcus m2 (k65a, n66a) protein
34c5hyuA_
not modelled 15.7 45
PDB header:immune system
Chain: A: PDB Molecule:m protein, serotype 2.1;
PDBTitle: structure of human c4b-binding protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m23 protein
35d2hjqa1
not modelled 13.8 20
Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:YqbF C-terminal domain-like
36c1sy9B_
not modelled 12.4 58
PDB header:calcium-binding protein
Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel;
PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel
37c1j1eB_
not modelled 12.4 22
PDB header:contractile protein
Chain: B: PDB Molecule:troponin t;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
38d1jeia_
not modelled 12.4 36
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
39c5xyiP_
not modelled 11.6 26
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
40c5j5vC_
not modelled 11.5 19
PDB header:toxin
Chain: C: PDB Molecule:immunity protein cdii;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cognate2 immunity protein and cysk
41c6c48E_
not modelled 11.5 33
PDB header:cell cycle/dna binding
Chain: E: PDB Molecule:protein lin-52 homolog;
PDBTitle: crystal structure of b-myb-lin9-lin52 complex
42c6f1ux_
not modelled 10.5 18
PDB header:motor protein
Chain: X: PDB Molecule:bicd family-like cargo adapter 1;
PDBTitle: n terminal region of dynein tail domains in complex with dynactin2 filament and bicdr-1
43c3layF_
not modelled 10.3 13
PDB header:metal binding protein
Chain: F: PDB Molecule:zinc resistance-associated protein;
PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2
44c3j20T_
not modelled 10.1 28
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
45c5lj3R_
not modelled 9.8 20
PDB header:splicing
Chain: R: PDB Molecule:pre-mrna-splicing factor cwc21;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
46d2odgc1
not modelled 9.8 43
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
47d1h1js_
not modelled 9.7 22
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
48c3zeyI_
not modelled 9.3 19
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
49d1xwya1
not modelled 9.3 22
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:TatD Mg-dependent DNase-like
50c2kveA_
not modelled 9.1 30
PDB header:hormone
Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor;
PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf)
51c6bk8K_
not modelled 9.1 21
PDB header:rna binding protein
Chain: K: PDB Molecule:pre-mrna-splicing factor cwc21;
PDBTitle: s. cerevisiae spliceosomal post-catalytic p complex
52c1gcmC_
not modelled 9.1 35
PDB header:transcription regulation
Chain: C: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
53c4ps2A_
not modelled 9.0 17
PDB header:contractile protein
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the c-terminal fragment (87-165) of e.coli eaec tssb2 molecule
54c4auvG_
not modelled 8.9 39
PDB header:apoptosis
Chain: G: PDB Molecule:breast cancer metastasis suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
55c3tweB_
not modelled 8.8 35
PDB header:unknown function
Chain: B: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
56c3tsoC_
not modelled 8.7 36
PDB header:protein transport
Chain: C: PDB Molecule:rab11 family-interacting protein 2;
PDBTitle: structure of the cancer associated rab25 protein in complex with fip2
57c1zrjA_
not modelled 8.7 35
PDB header:dna binding protein
Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c;
PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c
58c6bn1A_
not modelled 7.8 35
PDB header:signaling protein
Chain: A: PDB Molecule:serine/threonine-protein kinase hippo;
PDBTitle: salvador hippo sarah domain complex
59c4by7X_
not modelled 7.5 28
PDB header:transcription
Chain: X: PDB Molecule:transcription factor bye1;
PDBTitle: elongating rna polymerase ii-bye1 tld complex
60c2n64B_
not modelled 7.2 26
PDB header:signaling protein
Chain: B: PDB Molecule:sh3 domain-containing kinase-binding protein 1;
PDBTitle: nmr structure of the c-terminal coiled-coil domain of cin85
61c5x9xB_
not modelled 7.2 45
PDB header:signaling protein
Chain: B: PDB Molecule:metabotropic gaba-b receptor subtype 2;
PDBTitle: solution structure of heterodimeric coiled-coil domain of drosophila2 gabab receptor 1 and 2
62c2vdaA_
not modelled 7.1 33
PDB header:protein transport
Chain: A: PDB Molecule:translocase subunit seca;
PDBTitle: solution structure of the seca-signal peptide complex
63c1yv0T_
not modelled 7.1 21
PDB header:contractile protein
Chain: T: PDB Molecule:troponin t, fast skeletal muscle isoforms;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-free state
64c5xxuP_
not modelled 7.0 33
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
65d1ov9a_
not modelled 7.0 47
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
66d1qoja_
not modelled 6.9 22
Fold:Long alpha-hairpin
Superfamily:C-terminal UvrC-binding domain of UvrB
Family:C-terminal UvrC-binding domain of UvrB
67c1envA_
not modelled 6.9 32
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of
PDBTitle: atomic structure of the ectodomain from hiv-1 gp41
68c4u5tB_
not modelled 6.6 18
PDB header:transcription/transcription inhibitor
Chain: B: PDB Molecule:vbp leucine zipper;
PDBTitle: crystal structure of vbp leucine zipper with bound arylstibonic acid
69d1r8ja1
not modelled 6.6 20
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
70c2rg8A_
not modelled 6.5 21
PDB header:apoptosis, translation
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: crystal structure of programmed for cell death 4 middle ma3 domain
71c2e8mA_
not modelled 6.5 20
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
72c2do1A_
not modelled 6.4 30
PDB header:gene regulation
Chain: A: PDB Molecule:nuclear protein hcc-1;
PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1
73c2xusA_
not modelled 6.2 30
PDB header:protein binding
Chain: A: PDB Molecule:breast cancer metastasis-suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
74d1h9fa_
not modelled 6.1 35
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
75d1sv1a_
not modelled 6.0 10
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
76d1fs1b1
not modelled 6.0 21
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
77c2q6qB_
not modelled 5.7 42
PDB header:cell cycle
Chain: B: PDB Molecule:spindle pole body component spc42;
PDBTitle: crystal structure of spc42p, a critical component of spindle pole body2 in budding yeast
78c5z6nA_
not modelled 5.7 19
PDB header:transferase
Chain: A: PDB Molecule:protein elaa;
PDBTitle: crystal structure of escherichia coli elaa
79c3ggzC_
not modelled 5.7 13
PDB header:protein transport, endocytosis
Chain: C: PDB Molecule:increased sodium tolerance protein 1;
PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in complex2 with did2 mim motif
80d1dd3a1
not modelled 5.6 27
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
81c4udeA_
not modelled 5.6 25
PDB header:transcription
Chain: A: PDB Molecule:ginlfy protein;
PDBTitle: an oligomerization domain confers pioneer properties to the2 leafy master floral regulator
82c1nl3B_
not modelled 5.5 36
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase seca 1 subunit;
PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form
83c1kddD_
not modelled 5.4 26
PDB header:de novo protein
Chain: D: PDB Molecule:gcn4 acid base heterodimer base-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l
84c2outA_
not modelled 5.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mu-like prophage flumu protein gp35, protein
PDBTitle: solution structure of hi1506, a novel two domain protein2 from haemophilus influenzae
85d1hf8a1
not modelled 5.4 17
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:Phosphoinositide-binding clathrin adaptor, domain 2
86c2d9mA_
not modelled 5.4 24
PDB header:rna binding protein
Chain: A: PDB Molecule:zinc finger ccch-type domain containing protein
PDBTitle: solution structure of ccch type zinc-finger domain 3 in2 zinc finger ccch-type domain containing 7a
87c3frrA_
not modelled 5.1 29
PDB header:protein binding
Chain: A: PDB Molecule:uncharacterized protein kiaa0174;
PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21)
88c4ehsB_
not modelled 5.1 20
PDB header:transferase
Chain: B: PDB Molecule:dna primase;
PDBTitle: crystal structure of helicobacter pylori dnag primase c terminal2 domain
89c2a8vA_
not modelled 5.1 19
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
90c4dzlL_
not modelled 5.1 27
PDB header:de novo protein
Chain: L: PDB Molecule:coiled-coil peptide cc-tri;
PDBTitle: a de novo designed coiled coil cc-tri
91c1kd8E_
not modelled 5.0 26
PDB header:de novo protein
Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l
92c1kd9D_
not modelled 5.0 26
PDB header:de novo protein
Chain: D: PDB Molecule:gcn4 acid base heterodimer base-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l
93c1kd9E_
not modelled 5.0 26
PDB header:de novo protein
Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l
94c1kddE_
not modelled 5.0 26
PDB header:de novo protein
Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l

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