Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0713_(-)_809949_810890
DateFri Jul 26 01:50:28 BST 2019
Unique Job ID339702372ba40bcd
SequenceMAGSDPPTGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:71.197 Y:44.459 Z:89.688
Model (left) based on template c3eamB_
Top template information
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
Confidence and coverage
Confidence: 96.8% Coverage: 73%
230 residues ( 73% of your sequence) have been modelled with 96.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3eamB_
96.8 18
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
2c4pirD_
96.5 10
PDB header:transport protein
Chain: D: PDB Molecule:5-hydroxytryptamine receptor 3a;
PDBTitle: x-ray structure of the mouse serotonin 5-ht3 receptor
3c3jadC_
96.2 15
PDB header:signaling protein/antagonist
Chain: C: PDB Molecule:glycine receptor subunit alphaz1;
PDBTitle: structure of alpha-1 glycine receptor by single particle electron2 cryo-microscopy, strychnine-bound state
4c6d6uB_
96.0 16
PDB header:transport protein
Chain: B: PDB Molecule:gamma-aminobutyric acid receptor subunit alpha-1,gamma-
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation a
5c4cofC_
95.8 15
PDB header:transport protein
Chain: C: PDB Molecule:gamma-aminobutyric acid receptor subunit beta-3;
PDBTitle: crystal structure of a human gamma-aminobutyric acid receptor, the2 gaba(a)r-beta3 homopentamer
6c2vl0A_
95.7 20
PDB header:membrane protein
Chain: A: PDB Molecule:elic pentameric ligand gated ion channel from
PDBTitle: x-ray structure of a pentameric ligand gated ion channel2 from erwinia chrysanthemi (elic)
7c3riaC_
95.0 14
PDB header:transport protein/immune system
Chain: C: PDB Molecule:avermectin-sensitive glutamate-gated chloride channel glucl
PDBTitle: c. elegans glutamate-gated chloride channel (glucl) in complex with2 fab, ivermectin and iodide.
8c6hinA_
94.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:5-hydroxytryptamine receptor 3a;
PDBTitle: mouse serotonin 5-ht3 receptor, serotonin-bound, f conformation
9c6fvqE_
91.6 16
PDB header:membrane protein
Chain: E: PDB Molecule:cys-loop ligand-gated ion channel;
PDBTitle: the active form of a pentameric ion channel (stelic) gated by alkaline2 ph - r86a
10c5kxiA_
90.7 11
PDB header:transport protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-4;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
11c4aq9E_
88.8 13
PDB header:membrane protein
Chain: E: PDB Molecule:acetylcholine receptor gamma subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time- resolved2 electron cryo-microscopy (open class)
12c4aq5B_
86.5 13
PDB header:membrane protein
Chain: B: PDB Molecule:acetylcholine receptor beta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
13c2bg9E_
85.2 13
PDB header:ion channel/receptor
Chain: E: PDB Molecule:acetylcholine receptor protein, gamma chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
14c4aq5C_
84.2 16
PDB header:membrane protein
Chain: C: PDB Molecule:acetylcholine receptor delta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
15c5kxiC_
82.9 15
PDB header:transport protein
Chain: C: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
16c4aq5A_
79.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
17c2bg9A_
79.1 13
PDB header:ion channel/receptor
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
18c6d6uE_
77.7 15
PDB header:transport protein
Chain: E: PDB Molecule:gamma-aminobutyric acid receptor subunit gamma-2,gamma-
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation a
19c5jxfA_
66.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
20c5jxpA_
63.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
21c2bg9B_
not modelled 59.4 14
PDB header:ion channel/receptor
Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
22c4y01B_
not modelled 57.5 12
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase s46;
PDBTitle: crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
23c3wolB_
not modelled 54.9 24
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
24c6iz4G_
not modelled 44.9 30
PDB header:membrane protein
Chain: G: PDB Molecule:trimeric intracellular cation channel type b-b;
PDBTitle: crystal structure analysis of tric counter-ion channels in calcium2 release
25c6d6tE_
not modelled 44.8 15
PDB header:transport protein
Chain: E: PDB Molecule:human gaba-a receptor subunit gamma-2;
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation b
26c2m59A_
not modelled 44.3 20
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
27c2m59B_
not modelled 44.3 20
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
28c5egiB_
not modelled 40.4 25
PDB header:membrane protein
Chain: B: PDB Molecule:uncharacterized protein y57a10a.10;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 with bound ca2+
29c6iz0A_
not modelled 38.3 28
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric intracellular cation channel type a;
PDBTitle: crystal structure analysis of a eukaryotic membrane protein
30c5eikA_
not modelled 38.1 28
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein y57a10a.28;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 in the absence of ca2+
31c2bg9C_
not modelled 36.6 14
PDB header:ion channel/receptor
Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
32c5j09F_
not modelled 28.7 16
PDB header:virus
Chain: F: PDB Molecule:beak and feather disease virus capsid protein;
PDBTitle: crystal structure of decameric bfdv capsid protein
33c5jkqB_
not modelled 26.0 50
PDB header:solute binding protein
Chain: B: PDB Molecule:pfvft1;
PDBTitle: crystal structure of plasmodium falciparum pf3d7_0606800 (pfvft1)
34c2qc1B_
not modelled 17.7 13
PDB header:protein binding
Chain: B: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: crystal structure of the extracellular domain of the nicotinic2 acetylcholine receptor 1 subunit bound to alpha-bungarotoxin at 1.9 a3 resolution
35c2voyB_
not modelled 12.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
36c1zzaA_
not modelled 11.5 38
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
37c4xbiA_
not modelled 9.9 24
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
38c3r0rA_
not modelled 9.4 29
PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2
39c1wcuA_
not modelled 8.9 15
PDB header:carbohydrate binding
Chain: A: PDB Molecule:non-catalytic protein 1;
PDBTitle: cbm29_1, a family 29 carbohydrate binding module from2 piromyces equi
40d1x4ka2
not modelled 8.0 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
41c4gx5D_
not modelled 7.7 13
PDB header:transport protein
Chain: D: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel
42d1xmeb2
not modelled 7.5 54
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
43c6c14A_
not modelled 7.5 14
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
44c4d01A_
not modelled 7.5 14
PDB header:signaling protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-9;
PDBTitle: crystal structure of the extracellular domain of the human2 alpha9 nicotinic acetylcholine receptor
45c2na6B_
not modelled 7.3 33
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
46c2na6A_
not modelled 7.3 33
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
47c2na6C_
not modelled 7.3 33
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
48d1kp5a_
not modelled 6.5 24
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
49c4gucA_
not modelled 6.4 20
PDB header:unknown function
Chain: A: PDB Molecule:protein ba_2500;
PDBTitle: 1.4 angstrom resolution crystal structure of uncharacterized protein2 ba_2500 from bacillus anthracis str. ames
50d2a8ea1
not modelled 6.3 40
Fold:YktB/PF0168-like
Superfamily:YktB/PF0168-like
Family:YktB-like
51c3akoG_
not modelled 6.3 27
PDB header:fluorescent protein
Chain: G: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
52c5xyhA_
not modelled 6.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:cbsa;
PDBTitle: crystal structure of catalytic domain of 1,4-beta-cellobiosidase2 (cbsa) from xanthomonas oryzae pv. oryzae
53c1vw4E_
not modelled 6.0 14
PDB header:ribosome
Chain: E: PDB Molecule:54s ribosomal protein l7, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
54c6n3qD_
not modelled 5.9 12
PDB header:transport protein
Chain: D: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryo-em structure of the yeast sec complex
55d1ttza_
not modelled 5.9 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
56c3osrA_
not modelled 5.8 24
PDB header:fluorescent protein, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,green fluorescent
PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311
57d1oxda_
not modelled 5.5 24
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
58c3mqzA_
not modelled 5.4 47
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein duf1054;
PDBTitle: crystal structure of conserved protein duf1054 from pink subaerial2 biofilm microbial leptospirillum sp. group ii uba.

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Transmembrane helix prediction 

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