Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0714_(rplN)_811376_811744
DateFri Jul 26 01:50:28 BST 2019
Unique Job ID484d8a8c2cafede2
SequenceVIQQESRLKV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.569 Y:35.411 Z:46.224
Model (left) based on template d1whia_
Top template information
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
Confidence and coverage
Confidence:100.0% Coverage:100%
122 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1whia_
100.0 78
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
2d2j01o1
100.0 71
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
3d2zjrh1
100.0 70
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
4c3bboM_
100.0 60
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l14;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
5d2gyci1
100.0 66
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
6c1vw4I_
100.0 44
PDB header:ribosome
Chain: I: PDB Molecule:54s ribosomal protein l38, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
7c3j21J_
100.0 50
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l14p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
8d1vqok1
100.0 45
Fold:Ribosomal protein L14
Superfamily:Ribosomal protein L14
Family:Ribosomal protein L14
9c2zkrk_
100.0 40
PDB header:ribosomal protein/rna
Chain: K: PDB Molecule:rna expansion segment es19;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
10c4ce4O_
100.0 32
PDB header:ribosome
Chain: O: PDB Molecule:mrpl14;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
11d1oj5a_
37.1 10
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:PAS domain of steroid receptor coactivator 1A, NCo-A1
12c5iu1A_
26.6 18
PDB header:plant protein
Chain: A: PDB Molecule:ctr1-like protein;
PDBTitle: n-terminal pas domain homodimer of ppanr map3k from physcomitrella2 patens.
13c3icyB_
25.0 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:sensor protein;
PDBTitle: the crystal structure of sensory box histidine kinase/response2 regulator domain from chlorobium tepidum tls
14c3ewkA_
21.9 14
PDB header:flavoprotein
Chain: A: PDB Molecule:sensor protein;
PDBTitle: structure of the redox sensor domain of methylococcus capsulatus2 (bath) mmos
15d1zv9a1
21.3 20
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
16d1tyja1
20.7 20
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
17c3ghpA_
19.0 47
PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: structure of the second type ii cohesin module from the adaptor scaa2 scaffoldin of acetivibrio cellulolyticus (including long c-terminal3 linker)
18d2bm3a1
18.2 33
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
19c2b59A_
18.2 33
PDB header:hydrolase/structural protein
Chain: A: PDB Molecule:cog1196: chromosome segregation atpases;
PDBTitle: the type ii cohesin dockerin complex
20c5mu7B_
17.8 26
PDB header:protein transport
Chain: B: PDB Molecule:coatomer subunit delta-like protein;
PDBTitle: crystal structure of the beta/delta-copi core complex
21c3fnkA_
not modelled 17.6 47
PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: crystal structure of the second type ii cohesin module from the2 cellulosomal adaptor scaa scaffoldin of acetivibrio cellulolyticus
22c4wn5A_
not modelled 16.9 15
PDB header:transcription
Chain: A: PDB Molecule:hypoxia-inducible factor 3-alpha;
PDBTitle: crystal structure of the c-terminal per-arnt-sim (pasb) of human hif-2 3alpha9 bound to 18:1-1-monoacylglycerol
23c6dslB_
not modelled 13.5 24
PDB header:splicing
Chain: B: PDB Molecule:consensus engineered intein catc;
PDBTitle: consensus engineered intein (cat) with atypical split site
24c5vaeH_
not modelled 13.0 24
PDB header:cell adhesion
Chain: H: PDB Molecule:accessory sec system protein asp3;
PDBTitle: crystal structure of accessory secretion protein 1 and 3
25c5f6aA_
not modelled 11.3 22
PDB header:circadian clock protein
Chain: A: PDB Molecule:protein cycle;
PDBTitle: drosophila melanogaster cycle w398a pas-b with empty pocket
26c2kdkA_
not modelled 11.0 20
PDB header:transcription regulator
Chain: A: PDB Molecule:aryl hydrocarbon receptor nuclear translocator-like protein
PDBTitle: structure of human circadian clock protein bmal2 c-terminal pas domain
27c5nwmA_
not modelled 10.6 11
PDB header:signaling protein
Chain: A: PDB Molecule:nuclear receptor coactivator 1;
PDBTitle: insight into the molecular recognition mechanism of the coactivator2 ncoa1 by stat6
28c5a1vP_
not modelled 9.3 22
PDB header:transport protein
Chain: P: PDB Molecule:coatomer subunit delta;
PDBTitle: the structure of the copi coat linkage i
29c2xk0A_
not modelled 8.7 21
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
30c6cw2D_
not modelled 8.7 22
PDB header:gene regulation
Chain: D: PDB Molecule:histone acetyltransferase gcn5;
PDBTitle: crystal structure of a yeast saga transcriptional coactivator2 ada2/gcn5 hat subcomplex, crystal form 1
31c2pdtD_
not modelled 8.5 9
PDB header:circadian clock protein
Chain: D: PDB Molecule:vivid pas protein vvd;
PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid
32d2do3a1
not modelled 8.1 16
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
33d1v74a_
not modelled 6.9 28
Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin D nuclease domain
34c2eqjA_
not modelled 6.9 12
PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
35c4zprB_
not modelled 6.9 21
PDB header:protein transport/transcription/dna
Chain: B: PDB Molecule:hypoxia-inducible factor 1-alpha;
PDBTitle: crystal structure of the heterodimeric hif-1a:arnt complex with hre2 dna
36c2l3bA_
not modelled 6.6 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein found in conjugate transposon;
PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376
37c3lhnB_
not modelled 6.5 16
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution
38c2cwpA_
not modelled 6.4 30
PDB header:ligase
Chain: A: PDB Molecule:metrs related protein;
PDBTitle: crystal structure of metrs related protein from pyrococcus horikoshii
39c1xniI_
not modelled 6.3 21
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
40c4wujB_
not modelled 6.3 6
PDB header:circadian clock protein
Chain: B: PDB Molecule:glycoside hydrolase family 15, cellulose signaling
PDBTitle: structural biochemistry of a fungal lov domain photoreceptor reveals2 an evolutionarily conserved pathway integrating blue-light and3 oxidative stress
41d1ijdb_
not modelled 6.1 44
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
42c2pnyA_
not modelled 6.1 13
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
43c1vw4M_
not modelled 5.7 15
PDB header:ribosome
Chain: M: PDB Molecule:54s ribosomal protein img1, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
44c5znmB_
not modelled 5.6 26
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-d;
PDBTitle: colicin d central domain and c-terminal trnase domain
45c2xdpA_
not modelled 5.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
46c3h9wA_
not modelled 5.4 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:diguanylate cyclase with pas/pac sensor;
PDBTitle: crystal structure of the n-terminal domain of diguanylate cyclase with2 pas/pac sensor (maqu_2914) from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr66c
47c6h2bC_
not modelled 5.4 33
PDB header:virus like particle
Chain: C: PDB Molecule:capsid protein;
PDBTitle: structure of the macrobrachium rosenbergii nodavirus
48c5x3eA_
not modelled 5.4 28
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein;
PDBTitle: kinesin 6
49c3k2yD_
not modelled 5.3 24
PDB header:nucleotide binding protein
Chain: D: PDB Molecule:uncharacterized protein lp_0118;
PDBTitle: crystal structure of protein lp_0118 from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr91b
50c6fm0A_
not modelled 5.2 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: deoxyguanylosuccinate synthase (dgss) and atp structure at 1.72 angstrom resolution
51c2xkjE_
not modelled 5.2 13
PDB header:isomerase
Chain: E: PDB Molecule:topoisomerase iv;
PDBTitle: crystal structure of catalytic core of a. baumannii topo iv (pare-2 parc fusion truncate)
52c2m0oA_
not modelled 5.2 12
PDB header:peptide binding protein
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: the solution structure of human phf1 in complex with h3k36me3
53d1t3ta4
not modelled 5.2 40
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like

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