Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0717_(rpsN)_812630_812815
DateFri Jul 26 01:50:29 BST 2019
Unique Job ID3ae17c405a39d3e9
SequenceMAKKALVNKA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.265 Y:39.866 Z:43.785
Model (left) based on template d2uubn1
Top template information
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein S14
Confidence and coverage
Confidence:100.0% Coverage: 98%
60 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2uubn1



100.0 70
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein S14
2c6dzkN_



100.0 54
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal protein s14;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
3c3bbnN_



100.0 48
PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein s14;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
4d2qaln1



100.0 46
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein S14
5c2gy9N_



100.0 49
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal subunit protein s14;
PDBTitle: structure of the 30s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
6c3j6vN_



99.9 37
PDB header:ribosome
Chain: N: PDB Molecule:28s ribosomal protein s14, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
7c5xyid_



96.2 38
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
8c3jyvN_



96.1 31
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
9c3j20P_



96.0 39
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
10c2xznN_



95.9 31
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
11c5xxud_



95.9 28
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
12c2zkqn_



95.8 29
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
13c3zey8_



95.3 43
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
14c6az1S_



95.1 39
PDB header:ribosome/antibiotic
Chain: S: PDB Molecule:ribosomal protein s14;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
15c1s1hN_



85.3 38
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29-b;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
16c4j2nB_



27.8 27
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
17c4j2nA_



25.8 27
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
18c6amaO_



23.7 19
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
19d2bmfa1



18.0 30
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
20c4lhfA_



11.5 30
PDB header:viral protein
Chain: A: PDB Molecule:regulatory protein cox;
PDBTitle: crystal structure of a dna binding protein from phage p2
21c5ntbB_



not modelled 11.2 30
PDB header:protease inhibitor
Chain: B: PDB Molecule:papain inhibitor;
PDBTitle: streptomyces papain inhibitor (spi)
22c2zhhA_



not modelled 11.0 15
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
23c1yuzB_



not modelled 7.9 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
24c2xzm8_



not modelled 7.7 32
PDB header:ribosome
Chain: 8: PDB Molecule:rps25e,;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
25d1n10a2



not modelled 7.4 25
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:Pollen allergen PHL P 1 N-terminal domain
26c3zeyU_



not modelled 7.1 26
PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s25, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
27d2ieaa3



not modelled 7.1 21
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
28c2fugC_



not modelled 6.8 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
29d1r8da_



not modelled 6.5 12
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
30c1y6uA_



not modelled 6.2 27
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
31c3izbV_



not modelled 6.2 36
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein rps25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
32c4ivvA_



not modelled 5.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
33c1z4hA_



not modelled 5.7 18
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
34c3iz6V_



not modelled 5.7 23
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
35c5jyxB_



not modelled 5.5 19
PDB header:transferase
Chain: B: PDB Molecule:archeaosine synthase quef-like;
PDBTitle: crystal structure of the covalent thioimide intermediate of the2 archaeosine synthase quef-like
36c3gpvA_



not modelled 5.3 19
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr2 family from bacillus thuringiensis
37c3j3aZ_



not modelled 5.3 32
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s25;
PDBTitle: structure of the human 40s ribosomal proteins

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