Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0718_(rpsH)_812979_813377
DateFri Jul 26 01:50:29 BST 2019
Unique Job IDcb23cc96e80fd9aa
SequenceMTMTDPIADF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.057 Y:34.224 Z:46.072
Model (left) based on template c5o5jH_
Top template information
PDB header:ribosome
Chain: H: PDB Molecule:30s ribosomal protein s8;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
131 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jH_



100.0 96
PDB header:ribosome
Chain: H: PDB Molecule:30s ribosomal protein s8;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2c3rf2A_



100.0 43
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8;
PDBTitle: crystal structure of 30s ribosomal protein s8 from aquifex aeolicus
3d1i94h_



100.0 49
Fold:Ribosomal protein S8
Superfamily:Ribosomal protein S8
Family:Ribosomal protein S8
4d1i6ua_



100.0 25
Fold:Ribosomal protein S8
Superfamily:Ribosomal protein S8
Family:Ribosomal protein S8
5d1seia_



100.0 57
Fold:Ribosomal protein S8
Superfamily:Ribosomal protein S8
Family:Ribosomal protein S8
6d1an7a_



100.0 50
Fold:Ribosomal protein S8
Superfamily:Ribosomal protein S8
Family:Ribosomal protein S8
7c3bbnH_



100.0 41
PDB header:ribosome
Chain: H: PDB Molecule:ribosomal protein s8;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
8c1s1hH_



100.0 26
PDB header:ribosome
Chain: H: PDB Molecule:40s ribosomal protein s22;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
9d2gy9h1



100.0 48
Fold:Ribosomal protein S8
Superfamily:Ribosomal protein S8
Family:Ribosomal protein S8
10c5xxuW_



100.0 26
PDB header:ribosome
Chain: W: PDB Molecule:ribosomal protein us8;
PDBTitle: small subunit of toxoplasma gondii ribosome
11c2xznH_



100.0 24
PDB header:ribosome
Chain: H: PDB Molecule:ribosomal protein s8 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
12c5xyiW_



100.0 24
PDB header:ribosome
Chain: W: PDB Molecule:ribosomal protein s15a;
PDBTitle: small subunit of trichomonas vaginalis ribosome
13c4e4rA_



50.8 23
PDB header:transferase
Chain: A: PDB Molecule:phosphate acetyltransferase;
PDBTitle: eutd phosphotransacetylase from staphylococcus aureus
14c2zqeA_



33.5 18
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
15c4ochA_



30.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease muts2;
PDBTitle: apo structure of smr domain of muts2 from deinococcus radiodurans
16c2k19A_



21.1 16
PDB header:antimicrobial protein
Chain: A: PDB Molecule:putative piscicolin 126 immunity protein;
PDBTitle: nmr solution structure of pisi
17c4gl6B_



18.4 35
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf5037 family protein (rumgna_01148) from2 ruminococcus gnavus atcc 29149 at 2.55 a resolution
18c2zrrA_



18.3 16
PDB header:antimicrobial protein
Chain: A: PDB Molecule:mundticin ks immunity protein;
PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a
19d1a6sa_



15.1 24
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:GAG polyprotein M-domain
20d1khia2



11.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
21c3qd7X_



not modelled 10.8 14
PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein ydal;
PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli
22d2hgca1



not modelled 10.7 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:YjcQ-like
23c2hgcA_



not modelled 10.7 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yjcq protein;
PDBTitle: solution nmr structure of the yjcq protein from bacillus2 subtilis. northeast structural genomics target sr346.
24c4l5gA_



not modelled 9.5 17
PDB header:transcription
Chain: A: PDB Molecule:card;
PDBTitle: crystal structure of thermus thermophilus card
25d1zhva2



not modelled 8.8 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
26c6hq9A_



not modelled 8.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6-like 2;
PDBTitle: crystal structure of the tudor domain of human ercc6-l2
27c3mioA_



not modelled 8.1 15
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00
28c2qlvF_



not modelled 7.1 15
PDB header:transferase/protein binding
Chain: F: PDB Molecule:nuclear protein snf4;
PDBTitle: crystal structure of the heterotrimer core of the s. cerevisiae ampk2 homolog snf1
29c2lwjA_



not modelled 7.0 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, card family;
PDBTitle: nmr solution structure myxoccoccus xanthus cdnl
30d1vm0a_



not modelled 6.5 22
Fold:IF3-like
Superfamily:AlbA-like
Family:Hypothetical protein At2g34160
31c5j8jA_



not modelled 6.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase hda1;
PDBTitle: a histone deacetylase from saccharomyces cerevisiae
32c2e1nA_



not modelled 6.4 16
PDB header:circadian clock protein
Chain: A: PDB Molecule:pex;
PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex
33c4n7vB_



not modelled 6.0 8
PDB header:cell cycle
Chain: B: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep152 n-terminal fragment
34d2esha1



not modelled 5.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PadR-like
35c5cefA_



not modelled 5.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: cystal structure of aspartate semialdehyde dehydrogenase from2 cryptococcus neoformans
36c5z08A_



not modelled 5.3 11
PDB header:cell cycle
Chain: A: PDB Molecule:cenp-i;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
37c4iiwB_



not modelled 5.2 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lmo1499 protein;
PDBTitle: 2.6 angstrom crystal structure of putative yceg-like protein lmo14992 from listeria monocytogenes
38c4ayaA_



not modelled 5.1 18
PDB header:cell cycle
Chain: A: PDB Molecule:dna-binding protein inhibitor id-2;
PDBTitle: crystal structure of id2 hlh homodimer at 2.1a resolution

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