Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0720_(rplR)_813943_814311
DateFri Jul 26 01:50:29 BST 2019
Unique Job ID0041fac41a5531f4
SequenceMAQSVSATRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.587 Y:45.681 Z:30.956
Model (left) based on template c5o60P_
Top template information
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage:100%
122 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60P_
100.0 82
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c3bboQ_
100.0 47
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l18;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
3c3j3vO_
100.0 53
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l18;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
4d2gycm1
100.0 44
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
5d1ovya_
100.0 48
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
6c4v19S_
100.0 28
PDB header:ribosome
Chain: S: PDB Molecule:mitoribosomal protein ul18m, mrpl18;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
7d2zjrl1
100.0 46
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
8c2jl8S_
100.0 44
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l18;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit.
9d2j01s1
100.0 47
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
10c4ce4S_
100.0 29
PDB header:ribosome
Chain: S: PDB Molecule:mrpl18;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
11d1vqon1
100.0 31
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
12c3j21O_
99.9 29
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l18p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
13c2zkrn_
99.6 25
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:rna expansion segment es27;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
14c3j39D_
99.6 27
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
15c3zf7u_
99.6 30
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21e, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
16c3j3bD_
99.6 23
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: structure of the human 60s ribosomal proteins
17c4a1aM_
99.6 27
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l5;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
18c3izcQ_
99.5 30
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
19c3iz5Q_
99.4 24
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
20c1s1iE_
99.3 29
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein l5;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
21c5o5jK_
not modelled 97.5 20
PDB header:ribosome
Chain: K: PDB Molecule:30s ribosomal protein s11;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
22d2uubk1
not modelled 97.4 19
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
23c3j20M_
not modelled 97.2 15
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s11p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
24d2qalk1
not modelled 97.1 22
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
25c3j6vK_
not modelled 97.0 20
PDB header:ribosome
Chain: K: PDB Molecule:28s ribosomal protein s11, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
26c3bbnK_
not modelled 97.0 20
PDB header:ribosome
Chain: K: PDB Molecule:ribosomal protein s11;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
27c2zkqk_
not modelled 96.6 18
PDB header:ribosomal protein/rna
Chain: K: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
28c3jyvK_
not modelled 94.5 21
PDB header:ribosome
Chain: K: PDB Molecule:40s ribosomal protein s14(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
29c2yfnA_
not modelled 69.3 43
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
30c2xn1B_
not modelled 64.2 33
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
31c3mi6A_
not modelled 60.5 35
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
32c5awqA_
not modelled 58.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:isomaltodextranase;
PDBTitle: arthrobacter globiformis t6 isomalto-dextranse complexed with panose
33c2pohA_
not modelled 48.7 50
PDB header:viral protein
Chain: A: PDB Molecule:head completion protein;
PDBTitle: structure of phage p22 tail needle gp26
34c4fnrB_
not modelled 42.6 43
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase agaa;
PDBTitle: crystal structure of gh36 alpha-galactosidase agaa from geobacillus2 stearothermophilus
35c3ff4A_
not modelled 41.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
36c4s1aB_
not modelled 37.2 22
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein cthe_0052 from2 ruminiclostridium thermocellum atcc 27405
37c3mo4B_
not modelled 35.9 33
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-1,3/4-fucosidase;
PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697
38c6gn6A_
not modelled 35.2 40
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-fucosidase;
PDBTitle: alpha-l-fucosidase isoenzyme 1 from paenibacillus thiaminolyticus
39c4zrxA_
not modelled 34.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:f5/8 type c domain protein;
PDBTitle: crystal structure of a putative alpha-l-fucosidase (bacova_04357) from2 bacteroides ovatus atcc 8483 at 1.59 a resolution
40d1hl9a2
not modelled 33.4 38
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Putative alpha-L-fucosidase, catalytic domain
41c1hl8B_
not modelled 33.3 38
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase
42c3gzaB_
not modelled 32.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution
43c4fe4C_
not modelled 31.2 15
PDB header:transcription
Chain: C: PDB Molecule:xylose operon regulatory protein;
PDBTitle: crystal structure of apo e. coli xylr
44d2q4oa1
not modelled 31.2 17
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
45c2q4oA_
not modelled 31.2 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210
46c2wvsD_
not modelled 27.5 20
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-l-fucosidase;
PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant
47c4ni3B_
not modelled 27.5 26
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase gh29;
PDBTitle: crystal structure of gh29 family alpha-l-fucosidase from fusarium2 graminearum in the closed form
48c5oq3A_
not modelled 27.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:cwp19;
PDBTitle: high resolution structure of the functional region of cwp19 from2 clostridium difficile
49c5k9hA_
not modelled 27.3 60
PDB header:hydrolase
Chain: A: PDB Molecule:0940_gh29;
PDBTitle: crystal structure of a glycoside hydrolase 29 family member from an2 unknown rumen bacterium
50c3eypB_
not modelled 27.0 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron
51d1np7a2
not modelled 26.5 19
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
52c2juiA_
not modelled 25.9 42
PDB header:toxin
Chain: A: PDB Molecule:plne;
PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
53c6orfA_
not modelled 25.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:spgh29;
PDBTitle: crystal structure of spgh29
54c4c84B_
not modelled 25.5 47
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase znrf3;
PDBTitle: zebrafish znrf3 ectodomain crystal form i
55c3noyA_
not modelled 24.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
56d1owla2
not modelled 23.9 23
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
57c4c9vA_
not modelled 23.3 40
PDB header:signaling protein
Chain: A: PDB Molecule:rnf43;
PDBTitle: xenopus rnf43 ectodomain in complex with xenopus rspo2 fu1-fu2
58c3m0zD_
not modelled 23.1 20
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
59d3cuma2
not modelled 22.9 26
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
60c4nzjA_
not modelled 22.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-galactosidase;
PDBTitle: crystal structure of a putative alpha-galactosidase (bf1418) from2 bacteroides fragilis nctc 9343 at 1.57 a resolution
61c4ad2C_
not modelled 22.4 18
PDB header:hydrolase
Chain: C: PDB Molecule:glycosyl hydrolase family 71;
PDBTitle: structure of the gh99 endo-alpha-mannosidase from bacteroides2 xylanisolvens in complex with glucose-1,3-isofagomine
62d1zpda2
not modelled 20.8 22
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
63d1y81a1
not modelled 19.6 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
64c2duwA_
not modelled 19.4 35
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
65c3qk7C_
not modelled 19.3 20
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001
66c3qhaB_
not modelled 18.3 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from mycobacterium2 avium 104
67c4aczB_
not modelled 18.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-mannosidase;
PDBTitle: structure of the gh99 endo-alpha-mannosidase from2 bacteroides thetaiotaomicron
68c5u5gC_
not modelled 17.4 35
PDB header:oxidoreductase
Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase;
PDBTitle: psf3 in complex with nadp+ and 2-opp
69d1gtka2
not modelled 17.4 12
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
70c3sbxC_
not modelled 17.2 27
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp
71d1u3da2
not modelled 17.1 14
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
72d1pdaa2
not modelled 16.8 12
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
73d2hc5a1
not modelled 16.2 14
Fold:FlaG-like
Superfamily:FlaG-like
Family:FlaG-like
74c2w4lC_
not modelled 15.5 26
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
75c5k6lA_
not modelled 15.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:b-glucosidase;
PDBTitle: structure of a gh3 b-glucosidase from cow rumen metagenome
76c5ufhA_
not modelled 14.8 20
PDB header:transcription
Chain: A: PDB Molecule:laci-type transcriptional regulator;
PDBTitle: the crystal structure of a laci-type transcription regulator from2 bifidobacterium animalis subsp. lactis dsm 10140
77d1aopa1
not modelled 14.5 20
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
78c3gybB_
not modelled 14.4 15
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulators (laci-family
PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum
79c4jjaA_
not modelled 14.3 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0379) from2 bacteroides fragilis nctc 9343 at 1.30 a resolution
80c3eywA_
not modelled 14.2 22
PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
81c4xtbA_
not modelled 14.0 27
PDB header:transport protein
Chain: A: PDB Molecule:calcium uniporter protein, mitochondrial;
PDBTitle: crystal structure of the n-terminal domain of the human mitochondrial2 calcium uniporter
82d2djia2
not modelled 14.0 33
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
83d2i9ua1
not modelled 13.9 14
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:SAH/MTA deaminase-like
84c6ndiB_
not modelled 13.8 20
PDB header:sugar binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.60 angstrom resolution crystal structure of periplasmic binding and2 sugar binding domain of laci family protein from klebsiella3 pneumoniae.
85d1vpda2
not modelled 13.7 29
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
86c2cukC_
not modelled 13.4 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:glycerate dehydrogenase/glyoxylate reductase;
PDBTitle: crystal structure of tt0316 protein from thermus thermophilus hb8
87c4k05B_
not modelled 13.1 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical exported protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0371) from2 bacteroides fragilis nctc 9343 at 1.65 a resolution
88c4yyfC_
not modelled 13.1 16
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
89d1kjqa2
not modelled 13.0 21
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
90c2iz1C_
not modelled 12.9 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating;
PDBTitle: 6pdh complexed with pex inhibitor synchrotron data
91c2uyyD_
not modelled 12.9 19
PDB header:cytokine
Chain: D: PDB Molecule:n-pac protein;
PDBTitle: structure of the cytokine-like nuclear factor n-pac
92c1zy9A_
not modelled 12.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution
93c1vpdA_
not modelled 12.5 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:tartronate semialdehyde reductase;
PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2]
94c3toxG_
not modelled 12.2 30
PDB header:oxidoreductase
Chain: G: PDB Molecule:short chain dehydrogenase;
PDBTitle: crystal structure of a short chain dehydrogenase in complex with2 nad(p) from sinorhizobium meliloti 1021
95d1hjqa_
not modelled 12.0 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
96c5by4A_
not modelled 12.0 13
PDB header:protein transport
Chain: A: PDB Molecule:protein tolr;
PDBTitle: structure and function of the escherichia coli tol-pal stator protein2 tolr
97c4ulif_
not modelled 11.9 56
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l15-a;
PDBTitle: crystal structure of pactamycin bound to the yeast 80s ribosome
98c4ujye_
not modelled 11.9 56
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein l15-a;
PDBTitle: crystal structure of t-2 toxin bound to the yeast 80s ribosome
99c4ukje_
not modelled 11.9 56
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein l15-a;
PDBTitle: crystal structure of blasticidin s bound to the yeast 80s ribosome

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