Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0721_(rpsE)_814331_814993
DateFri Jul 26 01:50:29 BST 2019
Unique Job ID5d9c42a61a5091b5
SequenceMAEQPAGQAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.425 Y:73.876 Z:35.549
Model (left) based on template c5o5jE_
Top template information
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 78%
172 residues ( 78% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jE_
100.0 96
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2c3j6vE_
100.0 21
PDB header:ribosome
Chain: E: PDB Molecule:28s ribosomal protein s5, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
3c5mmje_
100.0 42
PDB header:ribosome
Chain: E: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
4c3bbnE_
100.0 48
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
5c1p6gE_
100.0 60
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: real space refined coordinates of the 30s subunit fitted into the low2 resolution cryo-em map of the ef-g.gtp state of e. coli 70s ribosome
6c2ow8f_
100.0 49
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa.
7c2xzmE_
100.0 31
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
8c1eg0B_
100.0 60
PDB header:ribosome
PDB COMPND:
9c3zeyP_
100.0 32
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s2, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
10c4kzzC_
100.0 31
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s2;
PDBTitle: rabbit 40s ribosomal subunit in complex with mrna, initiator trna and2 eif1a
11c5xyiC_
100.0 31
PDB header:ribosome
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
12c3j20F_
100.0 29
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
13c2zkqe_
100.0 32
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
14c1s1hE_
100.0 34
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s2;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
15c3izbE_
100.0 32
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein rps2 (s5p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
16c3iz6E_
100.0 33
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s2 (s5p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
17d2qale1
100.0 58
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
18d2uube1
100.0 52
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
19d1pkpa1
99.9 60
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
20d2uube2
99.9 46
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
21d2qale2
not modelled 99.9 62
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
22d1pkpa2
not modelled 99.9 62
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
23c1vw45_
not modelled 68.8 14
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
24d2b7ta1
not modelled 55.6 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
25d1p42a1
not modelled 55.5 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
26d2nuga2
not modelled 52.0 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
27c4oogC_
not modelled 51.5 21
PDB header:hydrolase/rna
Chain: C: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
28c2go4A_
not modelled 51.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514
29c3nzkB_
not modelled 48.6 47
PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
30c2vesA_
not modelled 47.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-acyl-n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa complexed with2 the potent bb-78485 inhibitor
31d1bf4a_
not modelled 46.8 31
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
32c2mdrA_
not modelled 43.3 10
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
33c2zqeA_
not modelled 43.0 37
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
34c6htuA_
not modelled 42.6 20
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
35c3adjA_
not modelled 41.7 21
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
36c2ljhA_
not modelled 41.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific editase adar;
PDBTitle: nmr structure of double-stranded rna-specific editase adar
37d2b7va1
not modelled 39.1 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
38d2vapa2
not modelled 38.9 20
Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
39d2pifa1
not modelled 38.7 19
Fold:PSTPO5379-like
Superfamily:PSTPO5379-like
Family:PSTPO5379-like
40d1stua_
not modelled 38.2 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
41d1sr9a3
not modelled 37.5 18
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
42d1w5fa2
not modelled 36.5 28
Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
43d1o0wa2
not modelled 36.5 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
44c5npgA_
not modelled 35.6 10
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious, isoform f;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd1
45d1ofua2
not modelled 35.6 19
Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
46d1rq2a2
not modelled 34.0 20
Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
47d1x47a1
not modelled 33.6 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
48c4gisB_
not modelled 33.2 18
PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase family member from vibrio harveyi2 (efi-target 501692) with homology to mannonate dehydratase, with mg,3 glycerol and dicarboxylates bound (mixed loops, space group i4122)
49d1qu6a2
not modelled 32.3 14
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
50c2ltrA_
not modelled 32.1 25
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(32-136)
51c3adiC_
not modelled 31.1 15
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
52d1tzza2
not modelled 29.2 32
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
53d1uila_
not modelled 29.1 8
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
54c2l3jA_
not modelled 25.4 27
PDB header:hydrolase/rna
Chain: A: PDB Molecule:double-stranded rna-specific editase 1;
PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove
55d1t4oa_
not modelled 23.4 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
56c1t4oA_
not modelled 23.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnt1p dsrbd
57d2dixa1
not modelled 22.3 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
58c2fkpC_
not modelled 22.3 21
PDB header:isomerase
Chain: C: PDB Molecule:n-acylamino acid racemase;
PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
59d1jpdx2
not modelled 21.7 18
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
60c3c4tA_
not modelled 19.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer;
PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer
61c2n3hA_
not modelled 19.8 21
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd2 (viz. drb4(81-151))
62c5b16A_
not modelled 19.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease 3,drosha,ribonuclease 3,drosha,ribonuclease 3;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
63d1r0ma2
not modelled 19.3 19
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
64d2f1da2
not modelled 18.3 15
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
65d1jdfa2
not modelled 17.5 22
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
66d1x48a1
not modelled 17.4 28
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
67d1bqga2
not modelled 17.1 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
68c5n8lA_
not modelled 16.5 20
PDB header:rna binding protein
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp dsrbd 1 and 2 in complex with a 19 bp sirna (complex2 b)
69d1azpa_
not modelled 16.0 30
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
70d1kn0a_
not modelled 15.4 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
71d1znna1
not modelled 15.1 21
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:PdxS-like
72c1znnF_
not modelled 15.1 21
PDB header:biosynthetic protein
Chain: F: PDB Molecule:plp synthase;
PDBTitle: structure of the synthase subunit of plp synthase
73c2n3gA_
not modelled 15.1 12
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
74c1yywB_
not modelled 14.9 23
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution
75d1l0oc_
not modelled 14.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
76c1l0oC_
not modelled 14.7 21
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
77c3adlA_
not modelled 14.7 15
PDB header:gene regulation/rna
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp2 and its molecule implications for mirna processing
78d2dmya1
not modelled 14.0 11
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
79d1u7na_
not modelled 13.7 13
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PlsX-like
80d1di2a_
not modelled 13.4 21
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
81c6ezmL_
not modelled 13.4 15
PDB header:lyase
Chain: L: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: imidazoleglycerol-phosphate dehydratase from saccharomyces cerevisiae
82d1t4na_
not modelled 13.0 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
83c1h2iG_
not modelled 12.8 22
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad52 homolog;
PDBTitle: human rad52 protein, n-terminal domain
84d1t4lb_
not modelled 12.5 25
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
85d1uhza_
not modelled 12.4 21
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
86c6ci7A_
not modelled 11.7 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:ycao;
PDBTitle: the structure of ycao from methanopyrus kandleri bound with amppcp and2 mg2+
87c2n5lA_
not modelled 11.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 c-terminal domain
88c1w5fA_
not modelled 11.4 28
PDB header:cell division
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima)
89c2gezE_
not modelled 11.4 13
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
90d1x49a1
not modelled 11.2 13
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
91c3rv0B_
not modelled 11.2 14
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
92d1tifa_
not modelled 11.0 53
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Translation initiation factor IF3, N-terminal domain
Family:Translation initiation factor IF3, N-terminal domain
93c3u4fC_
not modelled 10.9 13
PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a mandelate racemase (muconate lactonizing enzyme2 family protein) from roseovarius nubinhibens
94d1txga1
not modelled 10.8 25
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Glycerol-3-phosphate dehydrogenase
95c6o6dA_
not modelled 10.8 18
PDB header:ligase
Chain: A: PDB Molecule:translation initiation factor if-3;
PDBTitle: n-terminal domain of translation initiation factor if-3 from2 helicobacter pylori
96c4v1ah_
not modelled 10.7 10
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
97c1jpdX_
not modelled 10.3 17
PDB header:isomerase
Chain: X: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
98c3llhB_
not modelled 10.2 34
PDB header:rna binding protein
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2
99c2l2nA_
not modelled 10.2 15
PDB header:rna binding protein, plant protein
Chain: A: PDB Molecule:hyponastic leave 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1

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