Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0723_(rplO)_815193_815633
DateFri Jul 26 01:50:29 BST 2019
Unique Job ID0f26912ca9fe4260
SequenceVTLKLHDLRP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.762 Y:78.728 Z:52.375
Model (left) based on template c5o60M_
Top template information
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
144 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60M_



100.0 83
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c1vw4J_



100.0 37
PDB header:ribosome
Chain: J: PDB Molecule:54s ribosomal protein l10, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
3c3j3vL_



100.0 51
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l15;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
4c3bboN_



100.0 38
PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein l15;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
5d2zjri1



100.0 42
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
6c4ce4P_



100.0 33
PDB header:ribosome
Chain: P: PDB Molecule:mrpl15;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
7d2gycj1



100.0 42
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
8c4v19P_



100.0 33
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein ul15m, mrpl15;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
9d2j01p1



100.0 47
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
10c3j21L_



100.0 26
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l15p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
11c4a1cK_



100.0 28
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l27a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
12d1vqol1



100.0 29
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
13c3zf7b_



100.0 25
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
14c3j39a_



100.0 28
PDB header:ribosome
Chain: A: PDB Molecule:60s ribosomal protein l8;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
15c2zkrl_



100.0 28
PDB header:ribosomal protein/rna
Chain: L: PDB Molecule:rna expansion segment es20;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
16c1s1iV_



100.0 23
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l28;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
17c3iz5O_



100.0 27
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l27a (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
18c3j21P_



99.4 51
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
19d1vqoo1



99.3 43
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
20c3j3bQ_



98.9 27
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
21c3j39Q_



not modelled 98.8 29
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
22c3iz5R_



not modelled 98.8 24
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
23c3zf7I_



not modelled 98.8 26
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l18;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
24c4b6aQ_



not modelled 98.8 37
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18-b;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
25c2zkro_



not modelled 98.7 30
PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
26c4a1aN_



not modelled 98.7 27
PDB header:ribosome
Chain: N: PDB Molecule:rpl18;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
27c3izcR_



not modelled 98.6 37
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
28c1s1iO_



not modelled 98.2 37
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
29c5o60E_



not modelled 25.1 20
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
30c5uoiA_



not modelled 21.7 42
PDB header:de novo protein
Chain: A: PDB Molecule:hhh_rd1_0142;
PDBTitle: solution structure of the de novo mini protein hhh_rd1_0142
31d2qn6b1



not modelled 21.4 0
Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
32d1a9xa3



not modelled 14.2 12
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
33c2jo4D_



not modelled 12.7 39
PDB header:de novo protein
Chain: D: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
34c2jo4C_



not modelled 12.7 39
PDB header:de novo protein
Chain: C: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
35c2jo4B_



not modelled 12.7 39
PDB header:de novo protein
Chain: B: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
36c2jo4A_



not modelled 12.7 39
PDB header:de novo protein
Chain: A: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
37c2jo5A_



not modelled 12.5 39
PDB header:de novo protein
Chain: A: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
38c2jo5B_



not modelled 12.5 39
PDB header:de novo protein
Chain: B: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
39c2jo5C_



not modelled 12.5 39
PDB header:de novo protein
Chain: C: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
40c2jo5D_



not modelled 12.5 39
PDB header:de novo protein
Chain: D: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
41c2bpa3_



not modelled 12.2 43
PDB header:virus/dna
Chain: 3: PDB Molecule:protein (subunit of bacteriophage phix174);
PDBTitle: atomic structure of single-stranded dna bacteriophage2 phix174 and its functional implications
42d2zjq51



not modelled 12.0 25
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
43c2zjq5_



not modelled 12.0 25
PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: interaction of l7 with l11 induced by microccocin binding to the2 deinococcus radiodurans 50s subunit
44d1dd3a2



not modelled 11.5 19
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
45d1ctfa_



not modelled 11.5 13
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
46c4ce4F_



not modelled 10.3 20
PDB header:ribosome
Chain: F: PDB Molecule:mrpl4;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
47c2gya3_



not modelled 10.1 13
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
48c1giyJ_



not modelled 9.7 19
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix
49c6b4gH_



not modelled 8.7 100
PDB header:transport protein
Chain: H: PDB Molecule:nucleoporin amo1;
PDBTitle: crystal structure of chaetomium thermophilum gle1 ctd-nup42 gbm2 complex
50d1q8ka2



not modelled 8.5 19
Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
51c1vw4S_



not modelled 8.4 27
PDB header:ribosome
Chain: S: PDB Molecule:54s ribosomal protein l24, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
52c2ftcF_



not modelled 7.7 25
PDB header:ribosome
Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
53d1nlna_



not modelled 7.1 35
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
54d1a9xa4



not modelled 6.0 14
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
55c4dnhA_



not modelled 6.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein smc04132 from sinorhizobium2 meliloti 1021
56c3j3vE_



not modelled 6.0 17
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
57d1fe0a_



not modelled 5.5 17
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
58d1uj4a2



not modelled 5.4 31
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain

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