Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0736_(-)_828143_828895
DateFri Jul 26 01:50:31 BST 2019
Unique Job ID6238c17580a1d072
SequenceMTMPLRGLGP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.402 Y:28.425 Z:43.898
Model (left) based on template c3hugJ_
Top template information
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
Confidence and coverage
Confidence: 99.6% Coverage: 26%
64 residues ( 26% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3hugJ_



99.6 100
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
2c3vdoB_



99.4 19
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
3c2z2sD_



99.3 21
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
4c5wuqD_



99.1 18
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
5c5frhA_



98.8 13
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma factor rsra;
PDBTitle: solution structure of oxidised rsra
6c5camC_



91.4 16
PDB header:transcription
Chain: C: PDB Molecule:pupr protein;
PDBTitle: crystal structure of the cytoplasmic domain of the pseudomonas putida2 anti-sigma factor pupr (semet)
7c6cp8B_



42.5 24
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:cdia;
PDBTitle: contact-dependent growth inhibition toxin-immunity protein complex2 from from e. coli 3006
8c4ehpB_



29.7 35
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: crystal structure of human vinculin head domain (residues 1-252) in2 complex with alpha-catenin (residues 277-382)
9d2ou3a1



26.5 9
Fold:TerB-like
Superfamily:TerB-like
Family:COG3793-like
10c5ze4A_



25.8 26
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
11c3im9A_



23.6 13
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from staphylococcus aureus
12c4jd9B_



21.4 21
PDB header:protein binding
Chain: B: PDB Molecule:14.5 kda salivary protein;
PDBTitle: contact pathway inhibitor from a sand fly
13d1ryba_



20.1 17
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
14c2jxuA_



19.9 14
PDB header:unknown function
Chain: A: PDB Molecule:terb;
PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae
15c4ynhA_



18.9 19
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 5;
PDBTitle: structure of the c. elegans sas-5 implico dimerization domain
16c5oynB_



18.3 11
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
17c2mjlA_



18.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: solution structure of peptidyl-trna hyrolase from vibrio cholerae
18c3isyA_



17.7 11
PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
19d1wjva1



16.5 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:C2HC finger
20c5j84A_



15.9 19
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
21c4n71A_



not modelled 15.7 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:predicted hd phosphohydrolase phnz;
PDBTitle: x-ray crystal structure of 2-amino-1-hydroxyethylphosphonate-bound2 phnz
22c6iytA_



not modelled 15.1 35
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from second module 142 of salinomycin polyketide synthase
23d1ejxb_



not modelled 14.5 15
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
24d1mlaa1



not modelled 14.3 17
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
25d1nm2a1



not modelled 13.3 22
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
26c3neaA_



not modelled 13.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis
27d4ubpb_



not modelled 12.7 5
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
28d1z6na1



not modelled 12.7 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
29d2ptha_



not modelled 12.6 24
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
30d2f8aa1



not modelled 12.2 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
31c5icuA_



not modelled 12.1 12
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
32c3tzzA_



not modelled 11.9 23
PDB header:transferase
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: crystal structure of a fragment containing the acyltransferase domain2 of pks13 from mycobacterium tuberculosis in the carboxypalmitoylated3 form at 2.5 a
33c2n59A_



not modelled 11.8 9
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein csgh;
PDBTitle: solution structure of r. palustris csgh
34d1or7c_



not modelled 11.7 14
Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
35c1or7C_



not modelled 11.7 14
PDB header:transcription
Chain: C: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
36d1e9ya1



not modelled 11.4 7
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
37c4tr3A_



not modelled 11.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:type iii iodothyronine deiodinase;
PDBTitle: mouse iodothyronine deiodinase 3 catalytic core, semet-labeled active2 site mutant secys->cys
38c4z42B_



not modelled 11.2 11
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
39c2yreA_



not modelled 11.2 38
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 30;
PDBTitle: solution structure of the zinc finger domains (1-87) from2 human f-box only protein
40c2jfkD_



not modelled 11.1 19
PDB header:transferase
Chain: D: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the mat domain of human fas with malonyl-coa
41c6npaD_



not modelled 11.0 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:tmpb, (r)-1-hydroxy-2-trimethylaminoethylphosphonate
PDBTitle: x-ray crystal structure of tmpb, (r)-1-hydroxy-2-2 trimethylaminoethylphosphonate oxygenase, with (r)-1-hydroxy-2-3 trimethylaminoethylphosphonate
42c6iyoA_



not modelled 11.0 35
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from the second module2 of the salinomycin polyketide synthase
43c3rgiA_



not modelled 10.9 10
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
44c5czcA_



not modelled 10.6 33
PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: the structure of vink
45c2z2jA_



not modelled 9.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis
46d1o73a_



not modelled 9.2 38
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
47c3im8A_



not modelled 8.9 21
PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae
48c6gc1A_



not modelled 8.8 21
PDB header:unknown function
Chain: A: PDB Molecule:nhl repeat-containing protein 2;
PDBTitle: crystal structure of trx-like and nhl repeat containing domains of2 human nhlrc2
49c2hh7A_



not modelled 8.7 32
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein csor;
PDBTitle: crystal structure of cu(i) bound csor from mycobacterium tuberculosis.
50c4rr5A_



not modelled 8.5 17
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: the crystal structure of synechocystis sp. pcc 6803 malonyl-coa: acp2 transacylase
51c5d6sB_



not modelled 8.4 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
52c2c2nA_



not modelled 8.4 17
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of human mitochondrial malonyltransferase
53c4yodA_



not modelled 8.3 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-like protein;
PDBTitle: crystal structure of a thioredoxin-like protein (baccac_02376) from2 bacteroides caccae atcc 43185 at 1.90 a resolution
54c4indR_



not modelled 8.2 17
PDB header:viral protein
Chain: R: PDB Molecule:c381 turret protein;
PDBTitle: the triple jelly roll fold and turret assembly in an archaeal virus
55c4qbuA_



not modelled 8.2 12
PDB header:transferase
Chain: A: PDB Molecule:zmaa;
PDBTitle: structure of the acyl transferase domain of zmaa
56c3aaiB_



not modelled 8.1 26
PDB header:transcription
Chain: B: PDB Molecule:copper homeostasis operon regulatory protein;
PDBTitle: x-ray crystal structure of csor from thermus thermophilus hb8
57d1i5ga_



not modelled 7.8 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
58c3lwaA_



not modelled 7.8 25
PDB header:isomerase
Chain: A: PDB Molecule:secreted thiol-disulfide isomerase;
PDBTitle: the crystal structure of a secreted thiol-disulfide isomerase from2 corynebacterium glutamicum to 1.75a
59c5dz6A_



not modelled 7.8 10
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis malonyl coa-acyl carrier protein
PDBTitle: acyl transferase from bacillaene pks
60d2fsqa1



not modelled 7.5 17
Fold:LigT-like
Superfamily:LigT-like
Family:Atu0111-like
61d1z3ea1



not modelled 7.3 29
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
62c3myxA_



not modelled 7.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution
63c2m46A_



not modelled 7.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase, putative;
PDBTitle: solution nmr structure of sacol0876 from staphylococcus aureus col,2 nesg target zr353 and csgid target idp00841
64c2kokA_



not modelled 7.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: solution structure of an arsenate reductase (arsc) related protein2 from brucella melitensis. seattle structural genomics center for3 infectious disease target braba.00007.a.
65c3razA_



not modelled 7.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-related protein;
PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b
66c2g2oA_



not modelled 7.0 17
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of e.coli fabd complexed with sulfate
67d1rw1a_



not modelled 7.0 24
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
68c3f0iA_



not modelled 6.9 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: arsenate reductase from vibrio cholerae.
69c5n3uA_



not modelled 6.8 19
PDB header:lyase
Chain: A: PDB Molecule:phycocyanobilin lyase subunit alpha;
PDBTitle: the structure of the complex of cpce and cpcf of phycocyanin lyase2 from nostoc sp. pcc7120
70c1ij3B_



not modelled 6.8 17
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
71c1ij3C_



not modelled 6.8 17
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
72c4etrA_



not modelled 6.8 23
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: x-ray structure of pa2169 from pseudomonas aeruginosa
73c4dhwA_



not modelled 6.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from pseudomonas2 aeruginosa with adipic acid at 2.4 angstrom resolution
74c3hhdC_



not modelled 6.6 19
PDB header:transferase, hydrolase
Chain: C: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the human fatty acid synthase ks-mat didomain as a2 framework for inhibitor design.
75c4fopA_



not modelled 6.6 10
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from acinetobacter2 baumannii at 1.86 a resolution
76c3k7zB_



not modelled 6.4 17
PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
77c1rb1B_



not modelled 6.4 17
PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
78c1rb6C_



not modelled 6.4 17
PDB header:dna binding protein
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as n16a2 tetragonal form
79c1rb1A_



not modelled 6.4 17
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
80c3k7zA_



not modelled 6.4 17
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
81c1swiA_



not modelled 6.4 17
PDB header:leucine zipper
Chain: A: PDB Molecule:gcn4p1;
PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with benzene
82c3gwnA_



not modelled 6.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-linked sulfhydryl oxidase r596;
PDBTitle: crystal structure of the fad binding domain from mimivirus sulfhydryl2 oxidase r596
83c3ewlA_



not modelled 6.4 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein bf1870;
PDBTitle: crystal structure of conserved protein bf1870 of unknown function from2 bacteroides fragilis
84c5dz7A_



not modelled 6.3 13
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis protein pkse;
PDBTitle: structural basis of acyl transfer in a trans-at polyketide synthase
85c1e9zA_



not modelled 6.3 7
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
86c3fz4A_



not modelled 6.3 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative arsenate reductase;
PDBTitle: the crystal structure of a possible arsenate reductase from2 streptococcus mutans ua159
87c1ij2C_



not modelled 6.3 17
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
88c6ar7C_



not modelled 6.3 26
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia thailandensis
89c3mhsC_



not modelled 6.3 44
PDB header:hydrolase/transcription regulator/protei
Chain: C: PDB Molecule:saga-associated factor 11;
PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
90c3es4B_



not modelled 6.2 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution
91c2lusA_



not modelled 6.1 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxion;
PDBTitle: nmr structure of carcinoscorpius rotundicauda thioredoxin related2 protein 16 and its role in regulating transcription factor nf-kb3 activity
92c5bp1A_



not modelled 6.1 31
PDB header:transferase
Chain: A: PDB Molecule:mycocerosic acid synthase;
PDBTitle: condensing di-domain (ks-at) of a mycocerosic acid synthase-like (mas-2 like) pks
93c3qgaD_



not modelled 6.1 7
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
94c2hyxA_



not modelled 6.0 29
PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
95c3fkfC_



not modelled 6.0 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol-disulfide oxidoreductase;
PDBTitle: thiol-disulfide oxidoreductase from bacteroides fragilis nctc 9343
96c2he3A_



not modelled 5.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 2;
PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2)
97d1xvqa_



not modelled 5.9 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
98c3emxB_



not modelled 5.9 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
99c3gv1A_



not modelled 5.9 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below