Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0739_(-)_830858_831664
DateFri Jul 26 01:50:31 BST 2019
Unique Job ID0f837cacc128f289
SequenceLVLTRRAREV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.963 Y:84.903 Z:33.726
Model (left) based on template c5azpA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug efflux outer membrane protein oprn;
PDBTitle: crystal structure of a membrane protein from pseudomonas aeruginosa
Confidence and coverage
Confidence: 66.1% Coverage: 41%
109 residues ( 41% of your sequence) have been modelled with 66.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5azpA_



66.1 16
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug efflux outer membrane protein oprn;
PDBTitle: crystal structure of a membrane protein from pseudomonas aeruginosa
2c4mt0A_



59.7 19
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:mtre protein;
PDBTitle: crystal structure of the open state of the neisseria gonorrhoeae mtre2 outer membrane channel
3c2g7hA_



51.9 15
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529)
4c4p40A_



51.9 9
PDB header:transport protein
Chain: A: PDB Molecule:copn;
PDBTitle: chlamydia pneumoniae copn
5c5a48B_



51.3 26
PDB header:protein binding
Chain: B: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the lotus domain (aa 139-240) of drosophila2 oskar in p65
6c3pikA_



48.6 13
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusc;
PDBTitle: outer membrane protein cusc
7d1kx9b_



44.4 19
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
8c1wrjA_



37.9 13
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii
9c2marA_



31.7 16
PDB header:unknown function
Chain: A: PDB Molecule:sxp/ral-2 family protein;
PDBTitle: solution structure of ani s 5 anisakis simplex allergen
10c5azsC_



31.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:outer membrane protein oprj;
PDBTitle: crystal structure of a membrane protein from pseudomonas aeruginosa
11d1wp1a_



30.8 12
Fold:Outer membrane efflux proteins (OEP)
Superfamily:Outer membrane efflux proteins (OEP)
Family:Outer membrane efflux proteins (OEP)
12c6qviB_



30.0 53
PDB header:dna binding protein
Chain: B: PDB Molecule:comz;
PDBTitle: crystal structure of competence-associated pilin comz from thermus2 thermophilus
13c1d7mA_



27.9 18
PDB header:contractile protein
Chain: A: PDB Molecule:cortexillin i;
PDBTitle: coiled-coil dimerization domain from cortexillin i
14c1gaxB_



27.1 18
PDB header:ligase/rna
Chain: B: PDB Molecule:valyl-trna synthetase;
PDBTitle: crystal structure of thermus thermophilus valyl-trna2 synthetase complexed with trna(val) and valyl-adenylate3 analogue
15c3lr6A_



25.8 9
PDB header:structural protein
Chain: A: PDB Molecule:major ampullate spidroin 1;
PDBTitle: self-assembly of spider silk proteins is controlled by a ph-sensitive2 relay
16c2i3eA_



25.2 31
PDB header:hydrolase
Chain: A: PDB Molecule:g-rich;
PDBTitle: solution structure of catalytic domain of goldfish rich2 protein
17c4mt4C_



24.8 13
PDB header:transport protein
Chain: C: PDB Molecule:cmec;
PDBTitle: crystal structure of the campylobacter jejuni cmec outer membrane2 channel
18c5ah5B_



23.6 25
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
19c4mzvA_



23.0 22
PDB header:cell adhesion
Chain: A: PDB Molecule:epithelial cell adhesion molecule;
PDBTitle: crystal structure of extracellular part of human epcam
20c1yc9A_



22.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein;
PDBTitle: the crystal structure of the outer membrane protein vcec from the2 bacterial pathogen vibrio cholerae at 1.8 resolution
21d1xmwa2



not modelled 20.7 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
22c3loeA_



not modelled 20.6 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (f28a mutant)
23c3zplE_



not modelled 20.6 9
PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional regulator2 from streptomyces coelicolor, in complex with dna
24d1grja1



not modelled 20.3 22
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
25c3lgoA_



not modelled 18.8 26
PDB header:protein binding
Chain: A: PDB Molecule:protein slm4;
PDBTitle: structure of gse1p, member of the gse/ego complex
26c6b3oB_



not modelled 17.9 12
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: tectonic conformational changes of a coronavirus spike glycoprotein2 promote membrane fusion
27c2gvsA_



not modelled 17.9 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:chemosensory protein csp-sg4;
PDBTitle: nmr solution structure of cspsg4
28d1n26a1



not modelled 17.8 45
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
29c4mdvB_



not modelled 17.4 13
PDB header:metal binding protein
Chain: B: PDB Molecule:annexin;
PDBTitle: crystal structure of calcium-bound annexin (sm)1
30c5aj3j_



not modelled 17.1 28
PDB header:ribosome
Chain: J: PDB Molecule:mitoribosomal protein us10m, mrps10;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
31c6nzkB_



not modelled 16.4 15
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
32d1n8va_



not modelled 16.2 15
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
33c1sfeA_



not modelled 15.9 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
34c3jclC_



not modelled 15.2 12
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
35d1t3ua_



not modelled 14.9 19
Fold:Cell division protein ZapA-like
Superfamily:Cell division protein ZapA-like
Family:Cell division protein ZapA-like
36c1wkbA_



not modelled 14.4 20
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
37c6hcyA_



not modelled 14.4 20
PDB header:membrane protein
Chain: A: PDB Molecule:metalloreductase steap4;
PDBTitle: human steap4 bound to nadp, fad, heme and fe(iii)-nta.
38d1alaa_



not modelled 14.3 16
Fold:Annexin
Superfamily:Annexin
Family:Annexin
39c4lb1B_



not modelled 13.5 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
40c4lb1D_



not modelled 13.5 67
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
41c4lb1E_



not modelled 13.5 67
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
42c4lb1A_



not modelled 13.5 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
43c5w7dA_



not modelled 13.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: murine acyloxyacyl hydrolase (aoah), s262a mutant
44c3c8zB_



not modelled 13.4 11
PDB header:ligase
Chain: B: PDB Molecule:cysteinyl-trna synthetase;
PDBTitle: the 1.6 a crystal structure of mshc: the rate limiting2 enzyme in the mycothiol biosynthetic pathway
45c3t4aG_



not modelled 13.0 21
PDB header:immune system
Chain: G: PDB Molecule:fibrinogen-binding protein;
PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution
46c4ariA_



not modelled 12.8 25
PDB header:ligase/rna
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the2 benzoxaborole an2679 in the editing conformation
47c1ileA_



not modelled 12.7 20
PDB header:aminoacyl-trna synthetase
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: isoleucyl-trna synthetase
48c6q8aA_



not modelled 12.3 25
PDB header:ligase
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: neisseria gonorrhoeae leucyl-trna synthetase in complex with 5'-o-(n-2 (l-leucyl)-sulfamoyl)cytidine
49c6b7nC_



not modelled 12.1 11
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
50c1obhA_



not modelled 11.9 25
PDB header:synthetase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: leucyl-trna synthetase from thermus thermophilus complexed2 with a pre-transfer editing substrate analogue in both3 synthetic active site and editing site
51c2w9yA_



not modelled 11.8 17
PDB header:lipid transport
Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7,
PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans
52d2fp1a1



not modelled 11.8 13
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
53c3gfzB_



not modelled 11.6 14
PDB header:hydrolase, signaling protein
Chain: B: PDB Molecule:klebsiella pneumoniae blrp1;
PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
54c5hujB_



not modelled 11.3 15
PDB header:transferase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of nade from streptococcus pyogenes
55c5nh1A_



not modelled 10.9 19
PDB header:immune system
Chain: A: PDB Molecule:gasdermin-d;
PDBTitle: structure of the c-terminal domain of human gasdermin d
56c4lb7B_



not modelled 10.9 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
57c4lb7E_



not modelled 10.9 67
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
58c4lb7D_



not modelled 10.9 67
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
59c4lb7A_



not modelled 10.9 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
60c4akxA_



not modelled 10.9 33
PDB header:transport protein
Chain: A: PDB Molecule:spcu;
PDBTitle: structure of the heterodimeric complex exou-spcu from the type iii2 secretion system (t3ss) of pseudomonas aeruginosa
61c6fikA_



not modelled 10.6 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polyketide synthase;
PDBTitle: acp2 crosslinked to the ks of the loading/condensing region of the2 ctb1 pks
62c5x5bB_



not modelled 10.6 9
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
63c3t97A_



not modelled 10.6 17
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore glycoprotein p62;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54
64c2bytD_



not modelled 10.6 25
PDB header:synthetase
Chain: D: PDB Molecule:leucyl-trna synthetase;
PDBTitle: thermus thermophilus leucyl-trna synthetase complexed with2 a trnaleu transcript in the post-editing conformation
65c1wz2B_



not modelled 10.4 20
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
66c6iyoA_



not modelled 10.3 21
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from the second module2 of the salinomycin polyketide synthase
67c5gxyA_



not modelled 10.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:glucanase;
PDBTitle: crystal structure of endoglucanase celq from clostridium thermocellum2 complexed with cellobiose and tris
68c5w78B_



not modelled 10.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: human acyloxyacyl hydrolase (aoah), proteolytically processed
69c6af0P_



not modelled 10.0 45
PDB header:transcription
Chain: P: PDB Molecule:paf1 protein;
PDBTitle: structure of ctr9, paf1 and cdc73 ternary complex from myceliophthora2 thermophila
70c3tu3A_



not modelled 9.9 39
PDB header:toxin/toxin chaperone
Chain: A: PDB Molecule:exou chaperone;
PDBTitle: 1.92 angstrom resolution crystal structure of the full-length spcu in2 complex with full-length exou from the type iii secretion system of3 pseudomonas aeruginosa
71c3ziuA_



not modelled 9.7 17
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of mycoplasma mobile leucyl-trna2 synthetase with leu-ams in the active site
72c2jy8A_



not modelled 9.6 24
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
73c3a16C_



not modelled 9.6 23
PDB header:lyase
Chain: C: PDB Molecule:aldoxime dehydratase;
PDBTitle: crystal structure of aldoxime dehydratase (oxdre) in complex2 with propionaldoxime
74c2qffA_



not modelled 9.6 22
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of staphylococcal complement inhibitor
75c2llkA_



not modelled 9.4 32
PDB header:cell cycle, transcription
Chain: A: PDB Molecule:cyclin-d-binding myb-like transcription factor 1;
PDBTitle: solution nmr structure of the n-terminal myb-like 1 domain of the2 human cyclin-d-binding transcription factor 1 (hdmp1), northeast3 structural genomics consortium (nesg) target id hr8011a
76d2k0bx1



not modelled 9.4 39
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
77c5wrvA_



not modelled 9.4 41
PDB header:protein transport
Chain: A: PDB Molecule:signal recognition particle subunit srp68;
PDBTitle: complex structure of human srp72/srp68
78c2wuhB_



not modelled 9.4 64
PDB header:receptor/peptide
Chain: B: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
79c2wuhC_



not modelled 9.4 64
PDB header:receptor/peptide
Chain: C: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
80d1h3na3



not modelled 9.4 24
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
81c2q25C_



not modelled 9.3 23
PDB header:virus,hydrolase/rna
Chain: C: PDB Molecule:protein alpha;
PDBTitle: flock house virus coat protein d75n mutant
82c6n9oB_



not modelled 9.2 19
PDB header:immune system
Chain: B: PDB Molecule:gasdermin-d;
PDBTitle: crystal structure of human gsdmd
83c2pm4B_



not modelled 9.0 67
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1 (hnp-1) (hp-1) (hp1) (defensin, alpha
PDBTitle: human alpha-defensin 1 (multiple arg->lys mutant)
84c2pm4A_



not modelled 9.0 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1 (hnp-1) (hp-1) (hp1) (defensin, alpha
PDBTitle: human alpha-defensin 1 (multiple arg->lys mutant)
85d1nfpa_



not modelled 8.9 19
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
86c2k4fA_



not modelled 8.9 42
PDB header:immune system, signaling protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 epsilon chain;
PDBTitle: mouse cd3epsilon cytoplasmic tail
87c6nb3B_



not modelled 8.9 8
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
88c5eqwE_



not modelled 8.8 35
PDB header:structural protein
Chain: E: PDB Molecule:putative major coat protein;
PDBTitle: structure of the major structural protein d135 of acidianus tailed2 spindle virus (atsv)
89c3wolB_



not modelled 8.8 27
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
90c2lrmB_



not modelled 8.7 19
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein ymgd;
PDBTitle: assignment and structure of e coli periplasmic protein ymgd
91d1fyja_



not modelled 8.7 26
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:a tRNA synthase domain
92c3iv1F_



not modelled 8.6 20
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
93c4q16C_



not modelled 8.6 15
PDB header:ligase
Chain: C: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nad+ synthetase from deinococcus radiodurans
94c5xlrC_



not modelled 8.5 9
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
95c5frgA_



not modelled 8.4 19
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
96c4mhlA_



not modelled 8.0 33
PDB header:protein binding
Chain: A: PDB Molecule:interleukin-11;
PDBTitle: the crystal structure of human interleukin-11
97d1kpsb_



not modelled 7.9 21
Fold:alpha-alpha superhelix
Superfamily:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
Family:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
98c6n9nB_



not modelled 7.9 15
PDB header:immune system
Chain: B: PDB Molecule:gasdermin-d;
PDBTitle: crystal structure of murine gsdmd
99d2oa5a1



not modelled 7.9 19
Fold:BLRF2-like
Superfamily:BLRF2-like
Family:BLRF2-like

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