Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0740_(-)_831779_832306
DateFri Jul 26 01:50:31 BST 2019
Unique Job ID54b13a3758cbc882
SequenceMLPKNTRPTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.821 Y:38.557 Z:35.099
Model (left) based on template c5jxfA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
Confidence and coverage
Confidence: 83.6% Coverage: 19%
33 residues ( 19% of your sequence) have been modelled with 83.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5jxfA_



83.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
2c5jxpA_



83.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
3c4y01B_



78.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase s46;
PDBTitle: crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
4c3wolB_



75.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
5c3ushB_



62.1 31
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207
6d1a8ra_



59.2 19
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
7d1c3ga1



55.2 19
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
8c4iohA_



50.1 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tll1086 protein;
PDBTitle: crystal structure of the tll1086 protein from thermosynechococcus2 elongatus, northeast structural genomics consortium target ter258
9c2xxzA_



45.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: crystal structure of the human jmjd3 jumonji domain
10c2lq3A_



39.1 43
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of syc0711_d from synechococcus sp., northeast2 structural genomics consortium (nesg) target snr212
11c1wm9D_



38.7 29
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
12d1wura1



38.7 29
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
13c4ktzB_



31.9 70
PDB header:hydrolase
Chain: B: PDB Molecule:ruvc endonuclease;
PDBTitle: lactococcus phage 67 ruvc
14c4uqfB_



31.2 35
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
15d1wpla_



31.1 32
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
16c1is7F_



30.9 32
PDB header:hydrolase/protein binding
Chain: F: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
17c2wfuB_



23.6 50
PDB header:signaling protein
Chain: B: PDB Molecule:probable insulin-like peptide 5 b chain;
PDBTitle: crystal structure of dilp5 variant db
18c6feyF_



23.6 46
PDB header:peptide binding protein
Chain: F: PDB Molecule:probable insulin-like peptide 5;
PDBTitle: crystal structure of drosophila neural ectodermal development factor2 imp-l2 with drosophila dilp5 insulin
19c2wfvB_



23.2 50
PDB header:signaling protein
Chain: B: PDB Molecule:probable insulin-like peptide 5 b chain;
PDBTitle: crystal structure of dilp5 variant c4
20d2diia1



22.2 75
Fold:BSD domain-like
Superfamily:BSD domain-like
Family:BSD domain
21c2diiA_



not modelled 21.3 75
PDB header:transcription
Chain: A: PDB Molecule:tfiih basal transcription factor complex p62
PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit
22c6feyH_



not modelled 20.9 46
PDB header:peptide binding protein
Chain: H: PDB Molecule:probable insulin-like peptide 5;
PDBTitle: crystal structure of drosophila neural ectodermal development factor2 imp-l2 with drosophila dilp5 insulin
23c3opwA_



not modelled 16.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:dna damage-responsive transcriptional repressor rph1;
PDBTitle: crystal structure of the rph1 catalytic core
24c3avsA_



not modelled 16.4 56
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 6a;
PDBTitle: catalytic fragment of utx/kdm6a bound with n-oxyalylglycine, and2 ni(ii)
25c4ezhA_



not modelled 16.4 56
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: the crystal structure of kdm6b bound with h3k27me3 peptide
26c2q8eB_



not modelled 15.6 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation protein 3a;
PDBTitle: specificity and mechanism of jmjd2a, a trimethyllysine-specific2 histone demethylase
27d1pmia_



not modelled 15.4 28
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Type I phosphomannose isomerase
28c3r67A_



not modelled 15.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosidase;
PDBTitle: crystal structure of a putative glycosidase (bt_4094) from bacteroides2 thetaiotaomicron vpi-5482 at 2.30 a resolution
29c4igpA_



not modelled 15.0 36
PDB header:structural protein
Chain: A: PDB Molecule:os05g0196500 protein;
PDBTitle: histone h3 lysine 4 demethylating rice jmj703 apo enzyme
30c6maiA_



not modelled 13.9 35
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5'-triphosphate nucleotidohydrolase2 from legionella pneumophila philadelphia 1
31c4plaA_



not modelled 13.6 34
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:chimera protein of phosphatidylinositol 4-kinase type 2-
PDBTitle: crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
32c2xueB_



not modelled 13.4 56
PDB header:oxidoreductase
Chain: B: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: crystal structure of jmjd3
33c3on5B_



not modelled 13.3 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:bh1974 protein;
PDBTitle: crystal structure of a xanthine dehydrogenase (bh1974) from bacillus2 halodurans at 2.80 a resolution
34d1qwra_



not modelled 13.1 28
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Type I phosphomannose isomerase
35c2qkiC_



not modelled 12.8 20
PDB header:immune system/hydrolase inhibitor
Chain: C: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
36c3h1yA_



not modelled 12.6 28
PDB header:isomerase
Chain: A: PDB Molecule:mannose-6-phosphate isomerase;
PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn)
37d1t62a_



not modelled 12.4 29
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical protein EF3133
38c3s9xA_



not modelled 11.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asch domain;
PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101
39c2w2iC_



not modelled 11.8 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate oxygenase;
PDBTitle: crystal structure of the human 2-oxoglutarate oxygenase2 loc390245
40c2lqtA_



not modelled 11.7 18
PDB header:unknown function
Chain: A: PDB Molecule:coiled-coil-helix-coiled-coil-helix domain-containing
PDBTitle: solution structure of chchd7
41d1gnta_



not modelled 11.2 27
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
42c2os2A_



not modelled 11.2 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 3a;
PDBTitle: crystal structure of jmjd2a complexed with histone h3 peptide2 trimethylated at lys36
43c2q2gA_



not modelled 11.1 16
PDB header:chaperone
Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment);
PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800
44c5yknA_



not modelled 10.3 25
PDB header:gene regulation
Chain: A: PDB Molecule:probable lysine-specific demethylase jmj14;
PDBTitle: crystal structure of arabidopsis thaliana jmj14 catalytic domain
45d1kafa_



not modelled 10.3 57
Fold:MotA C-terminal domain-like
Superfamily:DNA-binding C-terminal domain of the transcription factor MotA
Family:DNA-binding C-terminal domain of the transcription factor MotA
46d1rnja_



not modelled 10.3 42
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
47c2we7A_



not modelled 10.2 45
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0376c2 homologue from mycobacterium smegmatis
48d2rh2a1



not modelled 9.4 47
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:R67 dihydrofolate reductase
49c5wruA_



not modelled 9.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:probable inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from p2 falciparum
50d1euwa_



not modelled 8.8 42
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
51c2bruB_



not modelled 8.5 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
52c4bhrA_



not modelled 8.5 18
PDB header:cell adhesion
Chain: A: PDB Molecule:pilin, type iv;
PDBTitle: structure of the ttha1221 type iv pilin protein from2 thermus thermophilus
53c3tqzA_



not modelled 8.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii
54d1yqha1



not modelled 8.2 11
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
55c2ypdB_



not modelled 8.2 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable jmjc domain-containing histone demethylation prot
PDBTitle: crystal structure of the jumonji domain of human jumonji domain2 containing 1c protein
56c4uedB_



not modelled 7.8 28
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation factor 4e-binding protein 1;
PDBTitle: complex of human eif4e with the 4e binding protein 4e-bp1
57c6ip4A_



not modelled 7.8 28
PDB header:gene regulation
Chain: A: PDB Molecule:arabidopsis jmj13;
PDBTitle: crystal structure of arabidopsis thaliana jmj13 catalytic domain in2 complex with nog and an h3k27me3 peptide
58c3tawA_



not modelled 7.8 36
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical glycoside hydrolase;
PDBTitle: crystal structure of a putative glycoside hydrolase (bdi_3141) from2 parabacteroides distasonis atcc 8503 at 1.70 a resolution
59c4onzA_



not modelled 7.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of a putative glycoside hydrolase (bacova_02161)2 from bacteroides ovatus atcc 8483 at 1.85 a resolution
60c5jyxB_



not modelled 7.4 11
PDB header:transferase
Chain: B: PDB Molecule:archeaosine synthase quef-like;
PDBTitle: crystal structure of the covalent thioimide intermediate of the2 archaeosine synthase quef-like
61c2bazA_



not modelled 7.4 25
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein bsu20020;
PDBTitle: structure of yoss, a putative dutpase from bacillus subtilis
62d2iboa1



not modelled 7.2 9
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
63c5cehA_



not modelled 7.0 28
PDB header:oxidoreductase/inhibitor
Chain: A: PDB Molecule:lysine-specific demethylase 5a;
PDBTitle: structure of histone lysine demethylase kdm5a in complex with2 selective inhibitor
64c2my3B_



not modelled 6.9 83
PDB header:splicing
Chain: B: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: snu17p-pml1p structure intermediate during res complex assembly
65c6b4eC_



not modelled 6.7 67
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup42;
PDBTitle: crystal structure of saccharomyces cerevisiae gle1 ctd-nup42 gbm2 complex
66c2mxqA_



not modelled 6.6 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:paneth cell-specific alpha-defensin 1;
PDBTitle: the solution structure of defa1, a highly potent antimicrobial peptide2 from the horse
67d2z1ea2



not modelled 6.6 38
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
68c5a1fA_



not modelled 6.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 5b, lysine-specific
PDBTitle: crystal structure of the catalytic domain of plu1 in complex with2 n-oxalylglycine.
69c3zxkB_



not modelled 6.5 10
PDB header:hydrolase
Chain: B: PDB Molecule:hiaxhd3;
PDBTitle: engineering the active site of a gh43 glycoside hydrolase generates a2 biotechnologically significant enzyme that displays both endo-3 xylanase and exo-arabinofuranosidase activity
70c5ynpA_



not modelled 6.5 27
PDB header:transferase
Chain: A: PDB Molecule:nsp16 protein;
PDBTitle: crystal structure of mers-cov nsp16/nsp10 complex bound to sinefungin2 and m7gpppa
71c2lv4A_



not modelled 6.5 24
PDB header:protein binding
Chain: A: PDB Molecule:putative outer membrane or exported protein;
PDBTitle: zirs c-terminal domain
72c2n1dA_



not modelled 6.4 29
PDB header:protein binding
Chain: A: PDB Molecule:mrg/morf4l-binding protein;
PDBTitle: solution structure of the mrg15-mrgbp complex
73c2mkcB_



not modelled 6.4 83
PDB header:splicing
Chain: B: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: cooperative structure of the heterotrimeric pre-mrna retention and2 splicing complex
74c3alxB_



not modelled 6.3 45
PDB header:viral protein/membrane protein
Chain: B: PDB Molecule:hemagglutinin,linker,cdw150;
PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (mv-h(l482r)-slam(n102h/r108y) fusion)
75d1vk8a_



not modelled 6.2 20
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
76c5zwoZ_



not modelled 6.0 83
PDB header:splicing
Chain: Z: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
77d1gnla_



not modelled 5.9 27
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
78c1r46B_



not modelled 5.8 63
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase a;
PDBTitle: structure of human alpha-galactosidase
79c2n0pA_



not modelled 5.7 54
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein aq_1974;
PDBTitle: solution structure of aquifex aeolicus aq1974
80d1sgva2



not modelled 5.7 22
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
81c3lz8A_



not modelled 5.7 17
PDB header:chaperone
Chain: A: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution.
82c4ar1A_



not modelled 5.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:colh protein;
PDBTitle: crystal structure of the peptidase domain of collagenase h from2 clostridium histolyticum at 2.01 angstrom resolution.
83c3qc2A_



not modelled 5.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bacova_03624) from2 bacteroides ovatus at 2.30 a resolution
84d3clsd2



not modelled 5.5 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
85c2e5qA_



not modelled 5.3 58
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
86c2yx8A_



not modelled 5.3 50
PDB header:protein transport
Chain: A: PDB Molecule:receptor activity-modifying protein 1;
PDBTitle: crystal structure of the extracellular domain of human ramp1
87c3a5vA_



not modelled 5.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea

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