Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0743c_(-)_833889_834446
DateFri Jul 26 01:50:32 BST 2019
Unique Job IDab22ebdad047e82e
SequenceMTRQQLAHLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.729 Y:44.392 Z:39.739
Model (left) based on template c4e8iA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
Confidence and coverage
Confidence: 86.8% Coverage: 70%
129 residues ( 70% of your sequence) have been modelled with 86.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4e8iA_



86.8 16
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
2d1no5a_



54.7 24
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
3d1wota_



54.2 37
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
4c2mdwA_



50.3 50
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
5c2ky8A_



48.6 25
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
6c3fm2A_



44.1 32
PDB header:heme-binding protein
Chain: A: PDB Molecule:uncharacterized protein, distantly related to a heme
PDBTitle: crystal structure of a putative heme-binding protein (ava_4353) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
7d1ig4a_



39.4 22
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
8d1ylqa1



38.4 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
9c2l9dA_



36.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the protein yp_546394.1, the first structural2 representative of the pfam family pf12112
10d1ub1a_



35.8 25
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
11c3zvrA_



33.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of dynamin
12d1tu1a_



30.6 19
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
13d2gc6a1



27.8 17
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
14c3snhA_



26.3 44
PDB header:endocytosis
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of nucleotide-free human dynamin1
15c5xmcA_



25.3 32
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy;
PDBTitle: crystal structure of the auto-inhibited nedd4 family e3 ligase itch
16d2qdya1



23.0 27
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
17d1v29a_



22.9 27
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
18c3qyhG_



22.6 31
PDB header:lyase
Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida.
19c4l9cA_



22.5 20
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 7;
PDBTitle: crystal structure of the fp domain of human f-box protein fbxo72 (native)
20c2yscA_



22.4 38
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3
21d1qk9a_



not modelled 21.7 26
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
22c3kepA_



not modelled 21.0 11
PDB header:protein transport, rna binding protein
Chain: A: PDB Molecule:nucleoporin nup145;
PDBTitle: crystal structure of the autoproteolytic domain from the nuclear pore2 complex component nup145 from saccharomyces cerevisiae
23c2kq0A_



not modelled 20.4 56
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
24c2z0bB_



not modelled 20.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycerophosphodiester phosphodiesterase 5;
PDBTitle: crystal structure of cbm20 domain of human putative2 glycerophosphodiester phosphodiesterase 5 (kiaa1434)
25c4yntA_



not modelled 19.3 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose oxidase, putative;
PDBTitle: crystal structure of aspergillus flavus fad glucose dehydrogenase
26c1ju2A_



not modelled 18.9 30
PDB header:lyase
Chain: A: PDB Molecule:hydroxynitrile lyase;
PDBTitle: crystal structure of the hydroxynitrile lyase from almond
27c1naaB_



not modelled 18.2 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam
28c2lazA_



not modelled 18.2 44
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
29c2lb0A_



not modelled 18.2 44
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
30c1gpeA_



not modelled 18.1 20
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from penicillium amagasakiense
31c6ql4B_



not modelled 17.9 56
PDB header:motor protein
Chain: B: PDB Molecule:putative mitochondrial dynamin protein;
PDBTitle: crystal structure of nucleotide-free mgm1
32c3vxvA_



not modelled 17.6 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 4;
PDBTitle: crystal structure of methyl cpg binding domain of mbd4 in complex with2 the 5mcg/tg sequence
33d1kdga1



not modelled 17.6 22
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
34d1ugpa_



not modelled 17.5 27
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
35d1cgta2



not modelled 17.0 12
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
36c5nccB_



not modelled 16.9 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:fatty acid photodecarboxylase;
PDBTitle: structure of fatty acid photodecarboxylase in complex with fad and2 palmitic acid
37d1cf3a1



not modelled 16.8 30
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
38d2itka1



not modelled 16.8 44
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
39c3q9tB_



not modelled 16.6 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins;
PDBTitle: crystal structure analysis of formate oxidase
40c1wr4A_



not modelled 16.6 38
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
41c3fimB_



not modelled 16.6 44
PDB header:oxidoreductase
Chain: B: PDB Molecule:aryl-alcohol oxidase;
PDBTitle: crystal structure of aryl-alcohol-oxidase from pleurotus eryingii
42c5aa6F_



not modelled 16.6 38
PDB header:oxidoreductase
Chain: F: PDB Molecule:vanadium-dependent bromoperoxidase 2;
PDBTitle: homohexameric structure of the second vanadate-dependent2 bromoperoxidase (anii) from ascophyllum nodosum
43d1k9ra_



not modelled 16.3 36
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
44c4h7uA_



not modelled 16.2 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyranose dehydrogenase;
PDBTitle: crystal structure of pyranose dehydrogenase from agaricus meleagris,2 wildtype
45c2n8tA_



not modelled 16.0 31
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
46c4qi4A_



not modelled 15.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: dehydrogenase domain of myriococcum thermophilum cellobiose2 dehydrogenase, mtdh
47c2jmfA_



not modelled 15.4 38
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
48c4fm4C_



not modelled 15.4 18
PDB header:lyase
Chain: C: PDB Molecule:nitrile hydratase alpha subunit;
PDBTitle: wild type fe-type nitrile hydratase from comamonas testosteroni ni1
49d2f21a1



not modelled 15.3 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
50c3pz8A_



not modelled 15.3 44
PDB header:signaling protein
Chain: A: PDB Molecule:segment polarity protein dishevelled homolog dvl-1;
PDBTitle: crystal structure of dvl1-dix(y17d) mutant
51d1pina1



not modelled 15.3 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
52c1cf3A_



not modelled 14.9 30
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
53c3qw4B_



not modelled 14.8 19
PDB header:transferase, lyase
Chain: B: PDB Molecule:ump synthase;
PDBTitle: structure of leishmania donovani ump synthase
54c6h3gC_



not modelled 14.5 50
PDB header:oxidoreductase
Chain: C: PDB Molecule:alcohol oxidase;
PDBTitle: alcohol oxidase from phanerochaete chrysosporium
55d1cyga2



not modelled 14.5 25
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
56c2yshA_



not modelled 14.4 29
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
57c4whjA_



not modelled 14.3 44
PDB header:antiviral protein, hydrolase
Chain: A: PDB Molecule:interferon-induced gtp-binding protein mx2;
PDBTitle: myxovirus resistance protein 2 (mxb)
58c5hsaG_



not modelled 14.3 42
PDB header:oxidoreductase
Chain: G: PDB Molecule:alcohol oxidase 1;
PDBTitle: alcohol oxidase aox1 from pichia pastoris
59c4n0iB_



not modelled 14.2 24
PDB header:ligase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit b,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab in complex2 with glutamine
60c2jbvA_



not modelled 14.1 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:choline oxidase;
PDBTitle: crystal structure of choline oxidase reveals insights into the2 catalytic mechanism
61c3ip4B_



not modelled 13.9 30
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab
62c2ebuA_



not modelled 13.9 28
PDB header:replication
Chain: A: PDB Molecule:replication factor c subunit 1;
PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1
63d1f8ab1



not modelled 13.8 43
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
64c2reeB_



not modelled 13.7 18
PDB header:transferase, lyase
Chain: B: PDB Molecule:cura;
PDBTitle: crystal structure of the loading gnatl domain of cura from lyngbya2 majuscula
65d2f5va1



not modelled 13.6 44
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
66d1prtb1



not modelled 13.6 29
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
67c1e0mA_



not modelled 13.4 44
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
68d1i8gb_



not modelled 13.4 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
69d1cxla2



not modelled 13.4 47
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
70c3t37A_



not modelled 13.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: crystal structure of pyridoxine 4-oxidase from mesorbium loti
71d1cw0a_



not modelled 13.1 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
72d2f2ab2



not modelled 13.0 30
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like
73c4udpA_



not modelled 13.0 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-methanol-choline oxidoreductase;
PDBTitle: crystal structure of 5-hydroxymethylfurfural oxidase (hmfo) in the2 oxidized state
74d1ju2a1



not modelled 12.8 22
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
75c2l4jA_



not modelled 12.8 25
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
76d2jmfa1



not modelled 12.7 63
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
77d1y7pa1



not modelled 12.6 28
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:AF1403 C-terminal domain-like
78c1coyA_



not modelled 12.6 50
PDB header:oxidoreductase(oxygen receptor)
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase complexed with a steroid2 substrate. implications for fad dependent alcohol oxidases
79d1gpea1



not modelled 12.5 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
80c3al0B_



not modelled 12.3 36
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
81c2ysgA_



not modelled 12.3 36
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
82c2g5iB_



not modelled 12.2 30
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
83c1s3bB_



not modelled 12.2 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
84c1yw5A_



not modelled 12.2 25
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
85c2dmvA_



not modelled 12.2 38
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
86d1tk7a2



not modelled 12.1 56
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
87c1ymzA_



not modelled 11.9 56
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
88d1d7ya3



not modelled 11.8 19
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
89c2ysfA_



not modelled 11.8 56
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
90c2ez5W_



not modelled 11.7 23
PDB header:signalling protein,ligase
Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex
91c4p4sA_



not modelled 11.6 44
PDB header:antiviral protein/hydrolase
Chain: A: PDB Molecule:interferon-induced gtp-binding protein mx1;
PDBTitle: gmppcp-bound stalkless-mxa
92c5b3zB_



not modelled 11.4 50
PDB header:isomerase,sugar binding protein
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1,
PDBTitle: crystal structure of hpin1 ww domain (5-39) fused with maltose-binding2 protein
93d1qhoa2



not modelled 11.4 20
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
94d1tk7a1



not modelled 11.3 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
95c1wr7A_



not modelled 11.3 56
PDB header:ligase
Chain: A: PDB Molecule:nedd4-2;
PDBTitle: solution structure of the third ww domain of nedd4-2
96d3bmva2



not modelled 11.3 33
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
97c2gewA_



not modelled 11.1 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo)
98d1nmva1



not modelled 11.1 43
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
99c1dxlC_



not modelled 11.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum

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